y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.001G256800.1 |
Family | PL1 |
Protein Properties | Length: 405 Molecular Weight: 44603.6 Isoelectric Point: 8.7298 |
Chromosome | Chromosome/Scaffold: 01 Start: 51308047 End: 51311170 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 117 | 322 | 0 |
IQEEPLWIIFKHDMVIKLHMDLLVNSYKTIDGRGATVHIAGGPCIKVHKKRNIIIHGIHIHDCKRGGSGYVTDFPNHRSWSAGSDGDGITIFGGSHVWVD HCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSYKDDKNMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQHYAIGGSSSPTIFSQ GNRFLA |
Full Sequence |
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Protein Sequence Length: 405 Download |
MPFSFTFIFH LLLLSPSVIY VSASPVQDPE LVVQEVEKSI NGSRRNLGYL SCGTGNPIDD 60 CWRCDPNWER NRKRLASCAI GFGKNAIGGK DGKLYVVIDS SDNPINPKPG TLRHAVIQEE 120 PLWIIFKHDM VIKLHMDLLV NSYKTIDGRG ATVHIAGGPC IKVHKKRNII IHGIHIHDCK 180 RGGSGYVTDF PNHRSWSAGS DGDGITIFGG SHVWVDHCSL SNCFDGLIDV VHGSTAITIS 240 NNYMTHHNKV MLLGHSDSYK DDKNMQVTIA FNHFGEGLGG RMPRCRFGYF HVVNNDYTHW 300 QHYAIGGSSS PTIFSQGNRF LAPNNEDHKE VTKHFKSSKG EWRKWNWRSE GDLMLNGAFF 360 TASGAGATAR YDRASSMAAR PPLLVASITA GAGALRCKNG HLCG* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-28 | 137 | 320 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-68 | 136 | 320 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-77 | 129 | 324 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63756.1 | 0 | 19 | 403 | 13 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
RefSeq | XP_002300069.1 | 0 | 5 | 403 | 4 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318694.1 | 0 | 21 | 403 | 20 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 21 | 403 | 20 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515037.1 | 0 | 14 | 403 | 15 | 404 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 56 | 364 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 56 | 364 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pe9_B | 9e-17 | 196 | 394 | 139 | 358 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pe9_A | 9e-17 | 196 | 394 | 139 | 358 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1ooc_B | 9e-17 | 196 | 394 | 139 | 358 | A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A |