Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.001G266200.1 |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 42628 Isoelectric Point: 6.6863 |
Chromosome | Chromosome/Scaffold: 01 Start: 51908076 End: 51910486 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 380 | 0 |
ATRNYVKLLIPDNKMFLLQPLSFKGPCNPATIEVLLEGTVTAPERVGVWKFLDNRRKWIQFSDISGLVMKGGGQIDGQGAAWWNSNDVSNRPTALHFHNC KDVRLSSIHHKNSPRNHISIDTCNSLEISHIHITAPEESPNTDGIDISGSSNIFIHSSHIQTGDDCIAINSGTSSVNISDIFCGPGHGISIGSLGRNGED ARVEEIYVRNCTFVGTSNGVRVKTWRGGRGYARKIRFEDIKVVGVKQPVIIDQEYSSVEMESERSAVKISEVSYRNVKGTSSSDSAVELSCDPNVGCSEI LMEDISITKEDGSVATASCTNAHGT |
Full Sequence |
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Protein Sequence Length: 393 Download |
MKNLFFVLLI FVRVIASSTF CPSSLTFNVL SYGATGNGHT DDTQAFLKAW KDVCGATRNY 60 VKLLIPDNKM FLLQPLSFKG PCNPATIEVL LEGTVTAPER VGVWKFLDNR RKWIQFSDIS 120 GLVMKGGGQI DGQGAAWWNS NDVSNRPTAL HFHNCKDVRL SSIHHKNSPR NHISIDTCNS 180 LEISHIHITA PEESPNTDGI DISGSSNIFI HSSHIQTGDD CIAINSGTSS VNISDIFCGP 240 GHGISIGSLG RNGEDARVEE IYVRNCTFVG TSNGVRVKTW RGGRGYARKI RFEDIKVVGV 300 KQPVIIDQEY SSVEMESERS AVKISEVSYR NVKGTSSSDS AVELSCDPNV GCSEILMEDI 360 SITKEDGSVA TASCTNAHGT SSHCNPIVPC LN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-94 | 26 | 378 | 363 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-97 | 4 | 377 | 392 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 3.0e-104 | 3 | 392 | 399 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-117 | 23 | 391 | 376 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 5.0e-123 | 27 | 392 | 368 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 391 | 1 | 396 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 391 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABO81149.1 | 0 | 30 | 391 | 1 | 368 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | NP_195292.2 | 0 | 27 | 391 | 24 | 388 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 1 | 391 | 1 | 394 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-26 | 122 | 340 | 72 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-26 | 122 | 340 | 72 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-26 | 122 | 340 | 72 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-26 | 122 | 340 | 72 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-26 | 122 | 340 | 72 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |