| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.002G025800.1 |
| Family | PL1 |
| Protein Properties | Length: 393 Molecular Weight: 44247.9 Isoelectric Point: 9.8896 |
| Chromosome | Chromosome/Scaffold: 02 Start: 2768161 End: 2769664 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 110 | 310 | 0 |
| VWITFQRDMHIKLERPLLISSFTTIDGRGVNVDIAKNACLMVFKATNIIIHGIRIHDCKPQTPGVTMGPEGKVISLGHVDGDAIRLVTASKIWIDHNTLY NCQDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVVNNLYLGWLQYAIGGSMRPSLKSEANLFI A | |||
| Full Sequence |
|---|
| Protein Sequence Length: 393 Download |
| MISGNITFSY WHFALNIIII GILFSNFSVA KQSKIHELKM NVIDQCWRLN PKWRIQRPQL 60 ATCSIGYAGK MINNIGEDLV HYKVIDPSDD PINPKPGTLR YGASVIQGKV WITFQRDMHI 120 KLERPLLISS FTTIDGRGVN VDIAKNACLM VFKATNIIIH GIRIHDCKPQ TPGVTMGPEG 180 KVISLGHVDG DAIRLVTASK IWIDHNTLYN CQDGLLDVTR GSTDVTISNN WFRNQDKVML 240 LGHDDGYVRD QNMKVTVVYN HFGPNCNQRM PRIRHGYAHV VNNLYLGWLQ YAIGGSMRPS 300 LKSEANLFIA PTRGNKEVTW RKNNNTNGDA WEFHSVKDAF ENGASFTVTK GGRVPKPNYN 360 EEQRFKVVDV KYVRSLTRSS GILRCTKTSL CG* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-26 | 128 | 326 | 219 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-50 | 130 | 308 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-64 | 117 | 311 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 71 | 391 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 40 | 391 | 19 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 40 | 391 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 40 | 391 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 6 | 318 | 1 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 41 | 383 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 41 | 383 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 8e-17 | 104 | 299 | 42 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000003 | 126 | 308 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.000000000000006 | 108 | 308 | 61 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
