Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.002G065800.1 |
Family | PL1 |
Protein Properties | Length: 449 Molecular Weight: 50548.3 Isoelectric Point: 8.1592 |
Chromosome | Chromosome/Scaffold: 02 Start: 7639894 End: 7642692 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 168 | 366 | 0 |
IIFAHSMNIRLSQELIVAGDKTIDGRGADIYIVNGAGFTIQFVKNVIIHGIKIFDINAGQGGLIRDSESHYGLRTQSDGDGISIFGSSYIWIDHVSMRNA RDGLIDAIQGSTAITISNSHFTDHNEVMLFGASDSHEEDKIMQITLVFNHFGKRLVQRMPRCRFGFIHVVNNDYTHWEMYAIGGSKHPTIISEGNRFVA |
Full Sequence |
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Protein Sequence Length: 449 Download |
MTKLCSIFLL TCLVVTIPTF YANVLEDEEF LDNQTKSFDG YWKGRKQVAE KQNQEAYITD 60 PYSFTINMTN NISDLITGEE KGRRNLAGKQ SQDSCLATNP IDRCWRCDPK WSENRKKLAD 120 CVQGFGRDTI GGKKGPFYVV TSNLDNDMVN PVPGTLRHAV TRNGPLWIIF AHSMNIRLSQ 180 ELIVAGDKTI DGRGADIYIV NGAGFTIQFV KNVIIHGIKI FDINAGQGGL IRDSESHYGL 240 RTQSDGDGIS IFGSSYIWID HVSMRNARDG LIDAIQGSTA ITISNSHFTD HNEVMLFGAS 300 DSHEEDKIMQ ITLVFNHFGK RLVQRMPRCR FGFIHVVNND YTHWEMYAIG GSKHPTIISE 360 GNRFVAPDSK DAKQITKREY SLEPEWKKWQ WRSIKDEVIN GAFFIESGPD LTNRPFTRKD 420 MISSRPGTYV GRLTRHAGSL RCIVGKPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 0.002 | 37 | 86 | 51 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 4.0e-28 | 129 | 364 | 253 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 9.0e-58 | 180 | 364 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-67 | 174 | 368 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 38 | 448 | 31 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 38 | 448 | 60 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 14 | 448 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 9 | 448 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 4 | 448 | 8 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 99 | 438 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 99 | 438 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-21 | 156 | 366 | 38 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 1e-16 | 182 | 364 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3krg_A | 0.000000000000002 | 184 | 376 | 125 | 337 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |