Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.002G100400.1 |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 42053.8 Isoelectric Point: 8.3958 |
Chromosome | Chromosome/Scaffold: 02 Start: 19879804 End: 19882283 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 385 | 0 |
AKACASTNPSSVYVPQGRFLLRSATFGGQCHNKAITFTIDGTLMAPSDYRVIGNAGNWLHFQSVNGVSIRGGVLDGQGTALWSCKNSGKGNCPIGATTLA FTNSNNIAISGLTSLNSQMFHIVLNGCQNVKMQGVKVIADGNSPNTDGIHVQMSSYVTILNSKIRTGDDCISIGPGTTNLWIENIACGPGHGISIGSLGK VSREAGVQNVTVKTVTFTGTQNGVRIKTWGRPSDGFVRNVLFQDAIMVNVENPVIIDQNYCPDNKGCPGQASGVKVSDVTYQDIHGTSATQVAVKFDCSS KYPCSRIRLEDVKLTYKNQRALSSCNHADG |
Full Sequence |
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Protein Sequence Length: 398 Download |
MANPTPKPIP TFILHLILCC CFCSSLVMGA TYNVVSFGAK SDGKTDSTTA FLNAWAKACA 60 STNPSSVYVP QGRFLLRSAT FGGQCHNKAI TFTIDGTLMA PSDYRVIGNA GNWLHFQSVN 120 GVSIRGGVLD GQGTALWSCK NSGKGNCPIG ATTLAFTNSN NIAISGLTSL NSQMFHIVLN 180 GCQNVKMQGV KVIADGNSPN TDGIHVQMSS YVTILNSKIR TGDDCISIGP GTTNLWIENI 240 ACGPGHGISI GSLGKVSREA GVQNVTVKTV TFTGTQNGVR IKTWGRPSDG FVRNVLFQDA 300 IMVNVENPVI IDQNYCPDNK GCPGQASGVK VSDVTYQDIH GTSATQVAVK FDCSSKYPCS 360 RIRLEDVKLT YKNQRALSSC NHADGAALGS VQPESCF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 4.0e-89 | 59 | 383 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-92 | 30 | 394 | 374 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-102 | 34 | 397 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-107 | 31 | 396 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-144 | 32 | 397 | 367 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 12 | 397 | 8 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABC72324.1 | 0 | 12 | 397 | 8 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABC72325.1 | 0 | 12 | 397 | 8 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 12 | 397 | 8 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 12 | 397 | 8 | 393 | endopolygalacturonase [Prunus persica] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-18 | 127 | 370 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-16 | 33 | 386 | 22 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 7e-16 | 126 | 370 | 81 | 322 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 7e-16 | 126 | 370 | 81 | 322 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ia5_A | 7e-16 | 126 | 370 | 81 | 322 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |