Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.002G144400.1 |
Family | PL4 |
Protein Properties | Length: 686 Molecular Weight: 77136.2 Isoelectric Point: 8.2108 |
Chromosome | Chromosome/Scaffold: 02 Start: 28069465 End: 28075642 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 57 | 659 | 0 |
TNNFTQVVIDNGIVSLNLSKPGGYIIGLYYDGATNILSQKNNENDRGYLDVVWNGAGKPSFFERIHGTNFSVIEESDTLVEVSFLKTWTASLEGSSVPIN IDIRYILRSGDSGFYSYAIFTRPPGFPAVTVYQVRIVYKLDDGRFHYMAISDTRQRKMPTAEDRITGQVLAYPEAVLLTKATDPQIRGEVDDKYQYSSEN KDNSVHGWITEDDSAPVGFWVITPSNEFRNAGPTKQDLTSHVGPVSLSMFTSTHYGGKKVIMDFAKGEAYKKVFGPIFVYLNSFPIKTPFKSLWSDAVQQ LSNEEKKWPYDFIGSKDFFPPNQRGTLSGRLQVKDGGGVAQPAKSSYIGLALPGDEGSWQTESKGYQFWTQTDKDGSFSITNIVPGKYNLYAWVPGFIGD FKYQINVIKPGDNIHLGTLVFNPPRNGPTLWEIGIPDRSAAEFYVPDPNPKLVNRLYLNDSINRFRQYGLWARYTDLYPKNDLIFTVGVSDYHKDWFYAQ VTRSIGESQFVATTWQIQFQLENIIKGGNYTLQLALASASNSQLEVRFNKPKENPPYFSTEPQIGDDNAIARHGIHGLYKLYTVAVNSNQLVKGNNIIYL TQS |
Full Sequence |
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Protein Sequence Length: 686 Download |
MMVETHMRKQ VPLQWWFRMA VLLSLIFFGA CSDSSESVSF RKGLKTAPPP SPVKLNTNNF 60 TQVVIDNGIV SLNLSKPGGY IIGLYYDGAT NILSQKNNEN DRGYLDVVWN GAGKPSFFER 120 IHGTNFSVIE ESDTLVEVSF LKTWTASLEG SSVPINIDIR YILRSGDSGF YSYAIFTRPP 180 GFPAVTVYQV RIVYKLDDGR FHYMAISDTR QRKMPTAEDR ITGQVLAYPE AVLLTKATDP 240 QIRGEVDDKY QYSSENKDNS VHGWITEDDS APVGFWVITP SNEFRNAGPT KQDLTSHVGP 300 VSLSMFTSTH YGGKKVIMDF AKGEAYKKVF GPIFVYLNSF PIKTPFKSLW SDAVQQLSNE 360 EKKWPYDFIG SKDFFPPNQR GTLSGRLQVK DGGGVAQPAK SSYIGLALPG DEGSWQTESK 420 GYQFWTQTDK DGSFSITNIV PGKYNLYAWV PGFIGDFKYQ INVIKPGDNI HLGTLVFNPP 480 RNGPTLWEIG IPDRSAAEFY VPDPNPKLVN RLYLNDSINR FRQYGLWARY TDLYPKNDLI 540 FTVGVSDYHK DWFYAQVTRS IGESQFVATT WQIQFQLENI IKGGNYTLQL ALASASNSQL 600 EVRFNKPKEN PPYFSTEPQI GDDNAIARHG IHGLYKLYTV AVNSNQLVKG NNIIYLTQSI 660 VKGLFEGVMY DYIRLESPPT TSKQT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.002 | 416 | 453 | 38 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 1.0e-30 | 379 | 475 | 97 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 7.0e-47 | 487 | 676 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-68 | 56 | 339 | 290 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-69 | 62 | 246 | 187 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 49 | 678 | 48 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 9 | 681 | 2 | 674 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 63 | 681 | 1 | 620 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 19 | 678 | 14 | 667 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 63 | 681 | 2 | 621 | lyase, putative [Ricinus communis] |