| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.002G189400.1 |
| Family | GH28 |
| Protein Properties | Length: 480 Molecular Weight: 51925.1 Isoelectric Point: 4.6594 |
| Chromosome | Chromosome/Scaffold: 02 Start: 34501951 End: 34504825 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 108 | 431 | 0 |
| KAACAVESGILLAPENYSFKITSTIFSGPCKPGLVFQVDGTLMAPDGPNSWPEKDSRNQWLVFYRLDQMTLNGTGTIEGNGDKWWDLPCKPHRGPNGKTL SGPCGSPAMIRFFMSSNLKVNGLKIENSPQFHMKFDGCQGVLIDKLSISSPKLSPNTDGIHVENTKDVGIYNSFISNGDDCISVGPGSSNVDIAGLTCGP SHGISIGSLGVHNSQACVSNLTVRDSIIRESDNGLRIKTWQGGMGSVTGLRFDNIQMENVGNCIIIDQYYCLSKECLNQTSAVHVNDVSYSNIKGTYDVR TTPIHFACSDTVACTNITLSEVEL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 480 Download |
| MDLTVRVFFT LWTIVTLLNN NFGNVEGRYH HHTKQRKVSS VPTAPSDSST EPENPSVPPP 60 ADSPTVPSDP YPNDNQTSSS ECVFDVRSFG AVGDGCADDT PAFRAAWKAA CAVESGILLA 120 PENYSFKITS TIFSGPCKPG LVFQVDGTLM APDGPNSWPE KDSRNQWLVF YRLDQMTLNG 180 TGTIEGNGDK WWDLPCKPHR GPNGKTLSGP CGSPAMIRFF MSSNLKVNGL KIENSPQFHM 240 KFDGCQGVLI DKLSISSPKL SPNTDGIHVE NTKDVGIYNS FISNGDDCIS VGPGSSNVDI 300 AGLTCGPSHG ISIGSLGVHN SQACVSNLTV RDSIIRESDN GLRIKTWQGG MGSVTGLRFD 360 NIQMENVGNC IIIDQYYCLS KECLNQTSAV HVNDVSYSNI KGTYDVRTTP IHFACSDTVA 420 CTNITLSEVE LLPFEGALLD DPFCWNAYGT QETLTIPPIN CLREGYPETV GDLSEYQCS* 480 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-74 | 76 | 462 | 394 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 2.0e-77 | 79 | 431 | 358 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-88 | 118 | 431 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 7.0e-90 | 86 | 431 | 350 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-115 | 79 | 458 | 383 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK95305.1 | 0 | 8 | 467 | 7 | 463 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
| RefSeq | NP_175244.1 | 0 | 8 | 467 | 7 | 463 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263668.1 | 0 | 24 | 478 | 23 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312305.1 | 0 | 5 | 478 | 4 | 482 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519290.1 | 0 | 1 | 478 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 4e-23 | 145 | 431 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-23 | 145 | 431 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-23 | 145 | 431 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-23 | 145 | 431 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 4e-23 | 145 | 431 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
