Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.002G292300.1 |
Family | GH28 |
Protein Properties | Length: 470 Molecular Weight: 51219.1 Isoelectric Point: 4.5986 |
Chromosome | Chromosome/Scaffold: 02 Start: 45571487 End: 45574158 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 421 | 0 |
ASSGGSQLYVPPGRWLTGSFNLTSHFTLFLHKDAVILASQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVIITGANGTLDGQGDLWWQKFHKG ELKYTRPYLIEIMYSDNVQISNLTLVNSPSWNVHPVYSSNVVVQGVTILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTK QLVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIVAINTESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWAFWMTGNYGSHADDKYDPNALPVIQNINY RDMVAENVTMAARLEGISGDPFTGICISNVTIQLAKKAKKVPWTCTDID |
Full Sequence |
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Protein Sequence Length: 470 Download |
MDVLLSLCVL LVALPNVAVV ESRKAPVLDY FEYCAMSCRA YSASLEEFGG VGDGTTLNTK 60 AFQAAIDHLS QYASSGGSQL YVPPGRWLTG SFNLTSHFTL FLHKDAVILA SQDENDWPVI 120 DPLPSYGRGR DTQGGRFSSL IFGTNLTDVI ITGANGTLDG QGDLWWQKFH KGELKYTRPY 180 LIEIMYSDNV QISNLTLVNS PSWNVHPVYS SNVVVQGVTI LAPVTSPNTD GINPDSCTNT 240 RIEDCYIVSG DDCVAVKSGW DEYGIAYGMP TKQLVIRRLT CISPFSAVIA LGSEMSGGIQ 300 DVRAEDIVAI NTESGVRIKT AVGRGGYVKD IYVRRMTMKT MKWAFWMTGN YGSHADDKYD 360 PNALPVIQNI NYRDMVAENV TMAARLEGIS GDPFTGICIS NVTIQLAKKA KKVPWTCTDI 420 DGISSDVTPA PCNLLPEQGE ENIGACTFPE ESLPIEDVQV QTCTYSRNL* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03010 | PLN03010 | 6.0e-19 | 47 | 426 | 401 | + polygalacturonase |
PLN02218 | PLN02218 | 2.0e-24 | 23 | 433 | 431 | + polygalacturonase ADPG |
PLN03003 | PLN03003 | 9.0e-25 | 47 | 342 | 307 | + Probable polygalacturonase At3g15720 |
pfam00295 | Glyco_hydro_28 | 3.0e-29 | 141 | 432 | 299 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
COG5434 | PGU1 | 4.0e-61 | 43 | 339 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 21 | 468 | 41 | 488 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
RefSeq | XP_002277736.1 | 0 | 21 | 468 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002278930.1 | 0 | 21 | 465 | 31 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 4 | 467 | 18 | 477 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 20 | 467 | 30 | 477 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 42 | 408 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 42 | 408 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 42 | 408 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 42 | 408 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 7e-17 | 59 | 378 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |