Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.003G061600.1 |
Family | GH28 |
Protein Properties | Length: 535 Molecular Weight: 58127.8 Isoelectric Point: 7.878 |
Chromosome | Chromosome/Scaffold: 03 Start: 8320365 End: 8325757 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 145 | 488 | 0 |
EACKVEASTMVVPSDYVFFVGPISFSGPYCKPNIVFQLDGTIVAPTNPNAWGRGLLQWLEFTKLVGITIQGNGIIDGKGSVWWQDHQYDDPIDDEEKLIV PLNQTVPSPPLPIQSELGGKMPSVKPTALRFYGSFNPTVTGITILNSPQCHLKFDNCNGVLVHNVSISSPGNSPNTDGIHLQNSKDVLIYGSTMACGDDC ISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMTGVRIKTWQGGSGSVQGILFSNIQVSEVQFPIVIDQFYCDKRTCKNQTS AVSLAGINYERIRGTYTVMPVNFACSDSLPCVDVSLTAVELKPL |
Full Sequence |
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Protein Sequence Length: 535 Download |
MSALSFRGFT YMFLIVFLIW SSNFEACIAR RGKHWRQSSR DVSDAVYKKK GKNYGNGHNK 60 NHGGGGSKPK PPSHKGTPSP PYPPPPQRNT PKPPPSNEDN PTTPPPKPYN GGHSSTTTTF 120 NVLDFGAKGD GKTDDTKAFQ AAWAEACKVE ASTMVVPSDY VFFVGPISFS GPYCKPNIVF 180 QLDGTIVAPT NPNAWGRGLL QWLEFTKLVG ITIQGNGIID GKGSVWWQDH QYDDPIDDEE 240 KLIVPLNQTV PSPPLPIQSE LGGKMPSVKP TALRFYGSFN PTVTGITILN SPQCHLKFDN 300 CNGVLVHNVS ISSPGNSPNT DGIHLQNSKD VLIYGSTMAC GDDCISIQTG CSNVYVHNVN 360 CGPGHGISIG SLGKDNTRAC VSNITVRDVN MHNTMTGVRI KTWQGGSGSV QGILFSNIQV 420 SEVQFPIVID QFYCDKRTCK NQTSAVSLAG INYERIRGTY TVMPVNFACS DSLPCVDVSL 480 TAVELKPLQE QNHLYDPFCW QTYGELKTPT LPPIGCLQIG KPTSNRIQTD HDLC* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 4.0e-79 | 151 | 485 | 338 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-81 | 115 | 486 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 2.0e-82 | 120 | 485 | 371 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-89 | 116 | 486 | 375 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-106 | 120 | 513 | 398 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 534 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_564758.2 | 0 | 2 | 534 | 5 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 534 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 534 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 534 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-23 | 121 | 433 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-23 | 121 | 433 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-23 | 121 | 433 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-23 | 121 | 433 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-23 | 136 | 437 | 26 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |