Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.003G061700.1 |
Family | GH28 |
Protein Properties | Length: 1083 Molecular Weight: 119038 Isoelectric Point: 6.4365 |
Chromosome | Chromosome/Scaffold: 03 Start: 8346297 End: 8352036 |
Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 716 | 1045 | 0 |
ACSTPKSVLLIPQGRRYLVNATRFKGPCADKLIIQIDGTLVAPDEPKNWDPKLPRVWLDFSKLDKAVFQGSGVIDGSGSKWWAASCKKNKSNPCKGAPTA FTIDTSTSIRVKGLTIQNSQQMHFTISRCDSVRINGVKVSAPGDSPNTDGIHISESTNVIIQDSKIGTGDDCISIVNASSNIKMKRIYCGPGHGISIGSL GKDNSTGIVTKVILDTAVLRETTNGLRIKTWQGGSGYVRGVRFQNVRVENISNPIIIDQFYCDSPSSCQNQTSAVEISEVMYQNISGTTMSAKAIKFDCS DTTPCSNLVLSNVDLDKQDGTVETYCHSAQ |
Full Sequence |
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Protein Sequence Length: 1083 Download |
MQKPQFLSFL RAITTVPHTF LLTDSLYLKN RELHALIKRR DLNAALPLFH SMLLRDTVTY 60 NLIISGLREQ PEYALRFYAE MGSLGIGESS TTFSSVVAVC TNAAFFREGV QVHCRVVKLG 120 FSCNVFVGGA LVGFYTRMGL SRVALELFDE LPERNLAVWN VMLRGLCELL RVKVEDLLGF 180 YSRMRFEGVE PNGVTFCYLL WECCKQRRLH EGKTIHGCVW KVGLVESNVF VANALVDFYS 240 ACGCLVGARK CFEAIENANV ISWNSLVSVY AENSLLREAF EVFSVMQLWG RRPSIRSLVG 300 FLNLCSRSGE LCFGKQVHCL VMKMGFDEGS VHVQSALIDM YGKCRDIEGS VAVFECLPKR 360 TLECFNSLMS SLSHCEAVED MVELLGLMVD EGLVPDEVTI STTLKALSVS ALASFTSSQS 420 LHCYALKSGL GGHAAVACSL MDAYSRSGHV DLTRRIFESL PSPSAICFTS MINAYARNGM 480 GKEGIAVLQA MIERRLRPDK VTFLCALSGC NYTGLVEEGR VVFESMKALH GVNPDRRHFS 540 CMVDLLCRAG LLYEAEELLL RAPGKRDSFM WSSLLRSCRV HKNEEVGTRA AQVLLELDPG 600 DPAVWLQASN FYAEIGKFDE SRQIREVALA RKMTREIGHI HGVAGSMMYD SIGMLEELKS 660 LDSIDIEEET EVELSDIPSW RSEHGGKVLV NIDSFGAAGD GESDDTEALQ KAWGVACSTP 720 KSVLLIPQGR RYLVNATRFK GPCADKLIIQ IDGTLVAPDE PKNWDPKLPR VWLDFSKLDK 780 AVFQGSGVID GSGSKWWAAS CKKNKSNPCK GAPTAFTIDT STSIRVKGLT IQNSQQMHFT 840 ISRCDSVRIN GVKVSAPGDS PNTDGIHISE STNVIIQDSK IGTGDDCISI VNASSNIKMK 900 RIYCGPGHGI SIGSLGKDNS TGIVTKVILD TAVLRETTNG LRIKTWQGGS GYVRGVRFQN 960 VRVENISNPI IIDQFYCDSP SSCQNQTSAV EISEVMYQNI SGTTMSAKAI KFDCSDTTPC 1020 SNLVLSNVDL DKQDGTVETY CHSAQGFPYG VVHPSADCLS STDKISQVAE STMEEDIRHT 1080 EL* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03003 | PLN03003 | 3.0e-88 | 690 | 1072 | 395 | + Probable polygalacturonase At3g15720 |
PLN03010 | PLN03010 | 2.0e-91 | 691 | 1035 | 348 | + polygalacturonase |
pfam00295 | Glyco_hydro_28 | 2.0e-103 | 717 | 1030 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02218 | PLN02218 | 2.0e-117 | 690 | 1054 | 368 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 7.0e-141 | 669 | 1071 | 406 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF79584.1 | 0 | 1 | 1082 | 1 | 1161 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
EMBL | CAN65318.1 | 0 | 1 | 1082 | 1 | 1052 | hypothetical protein [Vitis vinifera] |
EMBL | CBI28554.1 | 0 | 1 | 1075 | 1 | 1097 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002317091.1 | 0 | 654 | 1072 | 1 | 416 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328586.1 | 0 | 17 | 638 | 53 | 671 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 1e-23 | 762 | 1030 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-23 | 762 | 1030 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-23 | 762 | 1030 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-23 | 762 | 1030 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 1e-23 | 762 | 1030 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE686036 | 289 | 640 | 928 | 0 |
FF399654 | 242 | 641 | 881 | 0 |
EV271942 | 221 | 702 | 922 | 0 |
FE686037 | 207 | 877 | 1083 | 0 |
FP038137 | 219 | 764 | 982 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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