Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.003G069100.1 |
Family | PL1 |
Protein Properties | Length: 448 Molecular Weight: 50292.9 Isoelectric Point: 7.5796 |
Chromosome | Chromosome/Scaffold: 03 Start: 10221435 End: 10223313 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 167 | 364 | 0 |
IIFERSMMIKLKQELIMTSDKTIDGRGVEVYIASGAGITVQFIRNVIIHGIKVYDIQVHGGGMIRDSETHYGLRTQSDGDGISIFGSSNIWIDHVSMRNC YDGLIDAIMGSTAITISNSHFTDHNEAMLFGASDSYDKDKIMQITLAFNHFGKRLVQRMPRCRYGFVHVVNNDYTHWEMYAIGGSKHPTIISEGNRFI |
Full Sequence |
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Protein Sequence Length: 448 Download |
MAIRQNLLVL LSLAVLIPTL NANTLESEEY WQKHENEFDP YWKGRAETAA VDNNAAYFPD 60 PYSVSGNLSS SVSELIVGKD KRRNLKGQRY TGPCMATNPI DRCWRCDPNW ANNRQKLADC 120 VQGFGRNTVG GKGGPFYVVT DPSDDNMVDL KPGTLRHAVT RTGPLWIIFE RSMMIKLKQE 180 LIMTSDKTID GRGVEVYIAS GAGITVQFIR NVIIHGIKVY DIQVHGGGMI RDSETHYGLR 240 TQSDGDGISI FGSSNIWIDH VSMRNCYDGL IDAIMGSTAI TISNSHFTDH NEAMLFGASD 300 SYDKDKIMQI TLAFNHFGKR LVQRMPRCRY GFVHVVNNDY THWEMYAIGG SKHPTIISEG 360 NRFIGPDNVH AKEITKREYS PESEWSSWQW RSINDEYMNG AFFVQSGPEL VDRPFSRQDM 420 IKAKPGSYVG RLTRYAGSLS CRVGLPC* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam04431 | Pec_lyase_N | 0.005 | 37 | 62 | 26 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. |
COG3866 | PelB | 1.0e-26 | 122 | 363 | 276 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 1.0e-57 | 178 | 363 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 2.0e-66 | 173 | 367 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 15 | 447 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 32 | 447 | 54 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 14 | 447 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 9 | 447 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 7 | 447 | 11 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 98 | 440 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 98 | 440 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-22 | 118 | 372 | 15 | 255 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000002 | 163 | 363 | 109 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000003 | 246 | 340 | 205 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |