Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.003G108700.1 |
Family | GH28 |
Protein Properties | Length: 450 Molecular Weight: 48631.2 Isoelectric Point: 4.9525 |
Chromosome | Chromosome/Scaffold: 03 Start: 26962519 End: 26965518 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 416 | 0 |
DKGGAQLYVPPGTWLTKSFNLTSHLTLFLEKGAVILGSQDPFHWDVVDPLPSYGRGVEVPGGRYQSLINGYMLDDVVITGNSGIIDGMGLAWWELFNSHS LNYSRPHIIELVASDHVVVSNLTFLNAPAYSIHPVYCSNVHIYNVSISAPPESPYTIGMVPDSSDHICIEDCVIETGYDAIALKSGWDEYGIAYGRPTEN VHIRRVHLQASSGSTIAFGSDMSGGISNILVENVHLYNSRSGIEFRTMRGRGGYMKEIVISGIEMVNIYTAMAATGYCGSHPDDKFDPNALPLLDHIILQ DMIGTNITIAGSFAGLQESPFTNICLSNINLSINSVSSIPWECSNIS |
Full Sequence |
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Protein Sequence Length: 450 Download |
MLVALLLLLS LSNEVRVNGD GGSRQCEHNP APKPRPHTVS ILEFGAVGDG KTLNTIAFQN 60 AIFYLKSFAD KGGAQLYVPP GTWLTKSFNL TSHLTLFLEK GAVILGSQDP FHWDVVDPLP 120 SYGRGVEVPG GRYQSLINGY MLDDVVITGN SGIIDGMGLA WWELFNSHSL NYSRPHIIEL 180 VASDHVVVSN LTFLNAPAYS IHPVYCSNVH IYNVSISAPP ESPYTIGMVP DSSDHICIED 240 CVIETGYDAI ALKSGWDEYG IAYGRPTENV HIRRVHLQAS SGSTIAFGSD MSGGISNILV 300 ENVHLYNSRS GIEFRTMRGR GGYMKEIVIS GIEMVNIYTA MAATGYCGSH PDDKFDPNAL 360 PLLDHIILQD MIGTNITIAG SFAGLQESPF TNICLSNINL SINSVSSIPW ECSNISGFSD 420 SVLPKPCPDL ETLSDCLSLL SIRGKAADM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-16 | 25 | 350 | 344 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-20 | 137 | 374 | 244 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 3.0e-23 | 37 | 375 | 343 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-28 | 36 | 337 | 314 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 2.0e-49 | 15 | 378 | 397 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 12 | 428 | 12 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 12 | 428 | 14 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 15 | 432 | 15 | 431 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 15 | 449 | 17 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 12 | 449 | 12 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9e-34 | 28 | 397 | 17 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9e-34 | 28 | 397 | 17 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9e-34 | 28 | 397 | 17 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9e-34 | 28 | 397 | 17 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.000000000008 | 35 | 383 | 153 | 546 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |