Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.003G207400.1 |
Family | PL1 |
Protein Properties | Length: 407 Molecular Weight: 44505 Isoelectric Point: 7.3622 |
Chromosome | Chromosome/Scaffold: 03 Start: 42186228 End: 42188285 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 126 | 325 | 0 |
WIIFARDMVIKLKEELIMNSFKTIDGRGASVHIANGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSN CNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRFVA |
Full Sequence |
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Protein Sequence Length: 407 Download |
MATTFPSLLL FLFSLLTPSL VSSSPVQNPQ LVAQEVNRKI NASVARRNLG YLSCGTGNPI 60 DDCWRCDPNW EKNRQRLADC AIGFGKNAIG GKNGKIYVVT DSSDDDAVTP KPGTLRYAVI 120 QEEPLWIIFA RDMVIKLKEE LIMNSFKTID GRGASVHIAN GPCITIQYVT NVIIHGINIH 180 DCKQGGNAMV RDSPRHYGWR TVSDGDGVSI FGGSHVWVDH CSLSNCNDGL IDAIHGSTAI 240 TISNNYMTHH DKVMLLGHSD SYTQDKNMQV TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY 300 THWEMYAIGG SAEPTINSQG NRFVAPDDRF SKEVTKHEDA PESEWKGWNW RSEGDLLVNG 360 AFFTASGAGA SSSYARASSL SARPSSLVGS ITTNAGALTC RKGSRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-27 | 145 | 323 | 193 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-75 | 138 | 323 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-83 | 132 | 327 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU21247.1 | 0 | 1 | 406 | 1 | 406 | unknown [Glycine max] |
DDBJ | BAE48664.1 | 0 | 17 | 406 | 23 | 413 | Pectate lyase [Prunus mume] |
EMBL | CBI14899.1 | 0 | 18 | 406 | 17 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002318694.1 | 0 | 17 | 406 | 16 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 17 | 406 | 16 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 58 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 58 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 77 | 325 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 3e-17 | 136 | 397 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 3e-17 | 136 | 397 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |