y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.003G287300.1 |
Family | PL4 |
Protein Properties | Length: 483 Molecular Weight: 54929 Isoelectric Point: 8.4737 |
Chromosome | Chromosome/Scaffold: 03 Start: 51322940 End: 51325509 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 14 | 466 | 0 |
AEDRSTGQPLAYPEAVLITHPSNPELQGEVDDKYQYSCANKDNKVHGWINLDSKTNNSVGFWMITPSNEFRSGGPIRQGLTSHVGPVTLNILHTTHYAGK EVTMRLHEGEPFKKVYGPVFAYLNSVSGVHGSEQVLWSDAVLQLSEEVNRWPYDFPKSEDFVPANKRGRVEGRLLVQDRHIKGGKFVYGHNAYIGLALPG DVGSWERQSKGYQFWSRADKVGNFTIENIVPGDYNLYAWIPGIFGDYKYSTIITITPGCIIQLGSLIYNPPRNGPTVWEIGIPDRSAAEFHVPNPYPNLI NRLYIGKPLHNFRQYGLWNRYNELYPNEDLTYNVDVNDYSRDWFYAQVPRKIGNNTFQPTAWEIKFHLPFVMRGSYTLRLALASATRSKLVIRFNNPLDR PPHFSTGSIGQDNAVARHGIHGLYWPYSVEVRSNVLVEGVNTIYLRQPKVTSP |
Full Sequence |
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Protein Sequence Length: 483 Download |
MAIADDRQRL MPTAEDRSTG QPLAYPEAVL ITHPSNPELQ GEVDDKYQYS CANKDNKVHG 60 WINLDSKTNN SVGFWMITPS NEFRSGGPIR QGLTSHVGPV TLNILHTTHY AGKEVTMRLH 120 EGEPFKKVYG PVFAYLNSVS GVHGSEQVLW SDAVLQLSEE VNRWPYDFPK SEDFVPANKR 180 GRVEGRLLVQ DRHIKGGKFV YGHNAYIGLA LPGDVGSWER QSKGYQFWSR ADKVGNFTIE 240 NIVPGDYNLY AWIPGIFGDY KYSTIITITP GCIIQLGSLI YNPPRNGPTV WEIGIPDRSA 300 AEFHVPNPYP NLINRLYIGK PLHNFRQYGL WNRYNELYPN EDLTYNVDVN DYSRDWFYAQ 360 VPRKIGNNTF QPTAWEIKFH LPFVMRGSYT LRLALASATR SKLVIRFNNP LDRPPHFSTG 420 SIGQDNAVAR HGIHGLYWPY SVEVRSNVLV EGVNTIYLRQ PKVTSPFQAI MYDYIRLERP 480 EA* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam06045 | Rhamnogal_lyase | 2.0e-13 | 1 | 43 | 45 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10316 | RGL4_M | 3.0e-31 | 179 | 279 | 101 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 7.0e-39 | 1 | 140 | 140 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-44 | 291 | 478 | 193 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 480 | 168 | 644 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 1 | 480 | 140 | 615 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002285627.1 | 0 | 1 | 482 | 22 | 499 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
RefSeq | XP_002308510.1 | 0 | 1 | 482 | 198 | 673 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527245.1 | 0 | 1 | 480 | 143 | 618 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY969340 | 325 | 75 | 398 | 0 |
EL409069 | 272 | 202 | 472 | 0 |
GW864372 | 306 | 1 | 303 | 0 |
EH792178 | 287 | 153 | 437 | 0 |
DY922281 | 283 | 115 | 396 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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