Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.004G047700.1 |
Family | GH28 |
Protein Properties | Length: 456 Molecular Weight: 49710.7 Isoelectric Point: 6.8432 |
Chromosome | Chromosome/Scaffold: 04 Start: 5510211 End: 5513153 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 84 | 434 | 0 |
QHASDGGATLIVPSGKWLTGPFNLTSHFTLFLQKDAVILASQDEKEWPSVALLPSYGKGRDAPDGRFSSLIFGYNLTDVVITGQNGTLDGQGSYWWVKFK KKEFTLTRPYMIEIMFSDQIQISNITLINSPSWFVHPIYSSNIIVSGLTILAPIDSPNTDGVNPDSCTNTRIEDCYIVSGDDCISPKSGWDNYGVKFGKP TKNIIIRRITCISPDSAMVALGSEMSGGIEDIRVEDLTAIDTQSAVRIKTAVGRGAYVKNIYVRNLNLNTMKYVFWMTGSYGSHPDPEFDPKALPVISGI NYKDIVAKNVTYAARLEGIPNDPFTGICISNVTMELSKEQHKLQWNCTDIS |
Full Sequence |
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Protein Sequence Length: 456 Download |
MSRTMKQCLH LGNTNVLGVI SLIITLGSLN VKVAECRAIG LGNSEYSAIN CRKHSATLTD 60 FGGVGDGKTS NTKIFATAIA NLTQHASDGG ATLIVPSGKW LTGPFNLTSH FTLFLQKDAV 120 ILASQDEKEW PSVALLPSYG KGRDAPDGRF SSLIFGYNLT DVVITGQNGT LDGQGSYWWV 180 KFKKKEFTLT RPYMIEIMFS DQIQISNITL INSPSWFVHP IYSSNIIVSG LTILAPIDSP 240 NTDGVNPDSC TNTRIEDCYI VSGDDCISPK SGWDNYGVKF GKPTKNIIIR RITCISPDSA 300 MVALGSEMSG GIEDIRVEDL TAIDTQSAVR IKTAVGRGAY VKNIYVRNLN LNTMKYVFWM 360 TGSYGSHPDP EFDPKALPVI SGINYKDIVA KNVTYAARLE GIPNDPFTGI CISNVTMELS 420 KEQHKLQWNC TDISGVSNNV TPTPCEELQQ KVFMN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-21 | 61 | 351 | 304 | + polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-23 | 55 | 418 | 378 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-24 | 58 | 453 | 410 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-26 | 154 | 442 | 300 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-53 | 58 | 358 | 324 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP33475.1 | 0 | 45 | 448 | 37 | 440 | polygalacturonase-like protein [Fragaria x ananassa] |
GenBank | ABD32865.1 | 0 | 13 | 451 | 8 | 439 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ACU17976.1 | 0 | 5 | 451 | 1 | 446 | unknown [Glycine max] |
RefSeq | XP_002327490.1 | 0 | 19 | 451 | 1 | 427 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 16 | 451 | 12 | 448 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 54 | 421 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 54 | 421 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 54 | 421 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 54 | 421 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.00000000000003 | 58 | 453 | 159 | 577 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |