Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.004G059200.1 |
Family | PL1 |
Protein Properties | Length: 404 Molecular Weight: 44566 Isoelectric Point: 7.118 |
Chromosome | Chromosome/Scaffold: 04 Start: 7936945 End: 7940810 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 124 | 322 | 0 |
IIFKRDMVITLKQELLVNSFKTIDGRGASVHIAGGGCITIHYVSNVIVHGIHIHDCKPTGNTNIRDSPEHSGFWTQSDGDGVSIFNSKHVWIDHCSLSNC RDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLA |
Full Sequence |
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Protein Sequence Length: 404 Download |
MASLSCFLLF ALSLLTPSFV SSSTLPDPEM VVQEVQRSIN ASRRNLGYLS CGTGNPIDDC 60 WRCHPNWENN RQRLADCAIG FGKDAIGGRN GRIYEVTDSG DDDAVNPKPG TLRYAAIQDE 120 PLWIIFKRDM VITLKQELLV NSFKTIDGRG ASVHIAGGGC ITIHYVSNVI VHGIHIHDCK 180 PTGNTNIRDS PEHSGFWTQS DGDGVSIFNS KHVWIDHCSL SNCRDGLIDA IHGSTAITIS 240 NNYMTHHDKV MLLGHSDSYT QDKDMQVTIA FNHFGEGLVQ RMPRCRHGYF HVVNNDYTHW 300 EMYAIGGSAN PTINSQGNRF LAPNIRFSKE VTKHEDAPQS EWMSWNWRSE GDMFLNGAYF 360 RQSGAGASSI YARASSLSAR PSSLVGSMTI TAGALTCRKG NRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-28 | 135 | 320 | 198 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-75 | 135 | 320 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-83 | 129 | 324 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63756.1 | 0 | 21 | 403 | 16 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 17 | 403 | 17 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275781.1 | 0 | 17 | 403 | 72 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300069.1 | 0 | 1 | 403 | 1 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 2 | 403 | 3 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 55 | 396 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 55 | 396 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-20 | 124 | 322 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 8e-16 | 138 | 320 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.000000000000004 | 168 | 394 | 115 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |