Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.004G097300.1 |
Family | GH28 |
Protein Properties | Length: 399 Molecular Weight: 42814.9 Isoelectric Point: 6.8465 |
Chromosome | Chromosome/Scaffold: 04 Start: 27624494 End: 27626905 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 380 | 0 |
WSDACASTTPSKVVIARGIYNLKQIEFKGPCMAPIEVQVDGTIKAPQDPNQLNGDAQWIKFTYINFLTLSGAGTFDGQGANAWTQNNCAKNKSCKKLSMN FGFGFLNNTIVRDITSKDSKYFHVNVLGCNNITFTNFNIVAPATSPNTDGIHIGRSTLVNIDNTNIATGDDCISLGDGSKQITVLNVTCGPGHGISVGSL GKYPNEKPVEDFFVSNCILNNTDNGVRIKTWPDTPATITVTGMHFEDIKMINVKNPIIIDQEYCPWNQCTKQNPSKIKISNVSFKNIIGTSGTKEGVVLI CSSGVPCEDVMLTDIDLTFNGTSAAAKLSNVK |
Full Sequence |
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Protein Sequence Length: 399 Download |
MDLQLKMITN ALFLLLVSSS ATAQFGVFDI SKYGAVPNGD ITEALTNAWS DACASTTPSK 60 VVIARGIYNL KQIEFKGPCM APIEVQVDGT IKAPQDPNQL NGDAQWIKFT YINFLTLSGA 120 GTFDGQGANA WTQNNCAKNK SCKKLSMNFG FGFLNNTIVR DITSKDSKYF HVNVLGCNNI 180 TFTNFNIVAP ATSPNTDGIH IGRSTLVNID NTNIATGDDC ISLGDGSKQI TVLNVTCGPG 240 HGISVGSLGK YPNEKPVEDF FVSNCILNNT DNGVRIKTWP DTPATITVTG MHFEDIKMIN 300 VKNPIIIDQE YCPWNQCTKQ NPSKIKISNV SFKNIIGTSG TKEGVVLICS SGVPCEDVML 360 TDIDLTFNGT SAAAKLSNVK PIIQGKSLPL LNSLLPIP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-75 | 30 | 380 | 358 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 4.0e-85 | 3 | 376 | 376 | + polygalacturonase | ||
PLN02793 | PLN02793 | 5.0e-88 | 27 | 365 | 347 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-114 | 53 | 380 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-124 | 11 | 380 | 381 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO62938.1 | 0 | 1 | 385 | 1 | 386 | polygalactorunase PG11 precursor [Medicago sativa] |
DDBJ | BAA89476.1 | 0 | 3 | 385 | 1 | 386 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 3 | 385 | 1 | 386 | polygalacturonase [Salix gilgiana] |
EMBL | CAA72003.1 | 0 | 1 | 385 | 1 | 384 | polygalacturonase [Medicago sativa] |
Swiss-Prot | Q40312 | 0 | 14 | 385 | 11 | 386 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-16 | 119 | 370 | 115 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000000001 | 191 | 379 | 149 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000001 | 191 | 379 | 149 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000001 | 191 | 379 | 149 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000000001 | 191 | 379 | 149 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |