| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.004G098100.1 |
| Family | PL1 |
| Protein Properties | Length: 387 Molecular Weight: 44006.5 Isoelectric Point: 9.9436 |
| Chromosome | Chromosome/Scaffold: 04 Start: 28357428 End: 28358900 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 105 | 305 | 0 |
| VWITFQKDMHIKLEKPLLISSFTTIDGRGVNIHIADSACLMIFKATNIIIHGIRVHHCKPQPPGIVMGPEGKVISLGQVDGDAIRLVTASKIWIDHNTLY DCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMKPSLKSEANLFV A | |||
| Full Sequence |
|---|
| Protein Sequence Length: 387 Download |
| MAFLEPRHLF LSCFIFFFLL NLSFAKQSKK NGLEMNVIDR CWRQNPEWRR HRSQLATCSV 60 GYVGKMINNI GNDLIHYKVT DSSDDPINPK PNTLRYGTSI IQGKVWITFQ KDMHIKLEKP 120 LLISSFTTID GRGVNIHIAD SACLMIFKAT NIIIHGIRVH HCKPQPPGIV MGPEGKVISL 180 GQVDGDAIRL VTASKIWIDH NTLYDCQDGL LDVTRGSTDV TISNNWFKNQ DKVMLLGHDD 240 GYVRDQNMKV TVVYNHFGPN CNQRMPRIRH GYAHVANNFY QGWLQYAIGG SMKPSLKSEA 300 NLFVAPSIGN KEVTWRKGND KGEDRWNFHS IRDVFENGAS FNVTKGRGVQ KPNYSKEQNF 360 IVVDAKFVRL LTRSSGVLRY NKNNIY* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-26 | 123 | 303 | 195 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-51 | 125 | 303 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-62 | 112 | 307 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 66 | 382 | 1 | 316 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 34 | 382 | 18 | 365 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 35 | 378 | 1 | 346 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 35 | 384 | 1 | 350 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 13 | 313 | 11 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 36 | 378 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 36 | 378 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-16 | 95 | 294 | 40 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000005 | 121 | 303 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 0.00000000000004 | 128 | 330 | 82 | 271 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
