| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.004G101600.1 |
| Family | PL1 |
| Protein Properties | Length: 374 Molecular Weight: 42255.4 Isoelectric Point: 10.2864 |
| Chromosome | Chromosome/Scaffold: 04 Start: 30122338 End: 30123782 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 92 | 292 | 0 |
| VWITFQKDMLITLEKPLLISSFTTIDGRGVNVQIANNACLMIFKATNIIIHGIRVHHCKPQAPGIVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTFY NCQDGLLDVTRGSTNVTISNNWFKNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMEPSLKSEANLFI A | |||
| Full Sequence |
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| Protein Sequence Length: 374 Download |
| MILFFISSIS FAKQSKINGW KMNVIDRCWR LNSEWRRHQS QLATCSVGYA GKMVNNIGKD 60 IIHYKVTDSS DDPINPKPNT LRYGTSIIQG KVWITFQKDM LITLEKPLLI SSFTTIDGRG 120 VNVQIANNAC LMIFKATNII IHGIRVHHCK PQAPGIVMGP EGKVIPLGHV DGDAIRLVTA 180 SKIWIDHNTF YNCQDGLLDV TRGSTNVTIS NNWFKNQDKV MLLGHDDGYV RDQNMKVTVV 240 YNHFGPNCNQ RMPRIRHGYA HVANNLYQGW LQYAIGGSME PSLKSEANLF IAPTIGNKEV 300 TWRKSSNKNG DRWNFHSIGD NFENGASFAV TKGRDMQKPN YSKEQKFKVV NAKFVRSLTR 360 SSGVLRYNRN FVN* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 0.002 | 80 | 218 | 145 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG3866 | PelB | 2.0e-27 | 88 | 290 | 215 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-52 | 112 | 290 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-63 | 99 | 293 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 53 | 366 | 1 | 313 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 22 | 366 | 19 | 362 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 22 | 372 | 1 | 353 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 22 | 369 | 1 | 348 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 300 | 15 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 23 | 365 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 23 | 365 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-17 | 82 | 281 | 40 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000001 | 97 | 290 | 122 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 0.0000000000003 | 115 | 290 | 82 | 246 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT575750 | 223 | 144 | 366 | 0 |
| FD757999 | 224 | 106 | 329 | 0 |
| DR808308 | 255 | 23 | 270 | 0 |
| EL457563 | 284 | 23 | 303 | 0 |
| EL457552 | 274 | 23 | 294 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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