Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.004G108800.1 |
Family | GH28 |
Protein Properties | Length: 478 Molecular Weight: 52418.7 Isoelectric Point: 5.1502 |
Chromosome | Chromosome/Scaffold: 04 Start: 35909441 End: 35912267 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 86 | 429 | 0 |
GGAILLVPPGKWLTGSFNLTSHFTLFLQNEATILASQDESEWPILSVLPSYGRGRDAPDGRFSSLIFGTNLTDVVITGYNGTIDGQGSYWWDKFHKDELK LTRPYLIEIMFSNHIQISNLTLVNSPSWFVHPIYSSDIIIQGLTILAPVDSPNTDGINPDSCSNTRIEDCYIVSGDDCIAIKSGWDEYGIKFGMPSKHII IRRLECVSPDSAMIALGSEMSGGIQDVRAEDLTAINTESAVRIKTAVGRGAYVRDIFVKGMNLNTMKYVFWMTGSYGSHPDPGFDPKALPNITGINYRDV FADNVTYSARLDGIANDPFTGICISNVTIHSGDKKLQWNCTDIE |
Full Sequence |
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Protein Sequence Length: 478 Download |
MKPCSKFSDS YVVGVIFTVL LLGLQGVRVV ECKVANGLDF LEYPAISCRK HTAVLTDFGG 60 VGDGKTSNTK AFQYAISNLS HYASDGGAIL LVPPGKWLTG SFNLTSHFTL FLQNEATILA 120 SQDESEWPIL SVLPSYGRGR DAPDGRFSSL IFGTNLTDVV ITGYNGTIDG QGSYWWDKFH 180 KDELKLTRPY LIEIMFSNHI QISNLTLVNS PSWFVHPIYS SDIIIQGLTI LAPVDSPNTD 240 GINPDSCSNT RIEDCYIVSG DDCIAIKSGW DEYGIKFGMP SKHIIIRRLE CVSPDSAMIA 300 LGSEMSGGIQ DVRAEDLTAI NTESAVRIKT AVGRGAYVRD IFVKGMNLNT MKYVFWMTGS 360 YGSHPDPGFD PKALPNITGI NYRDVFADNV TYSARLDGIA NDPFTGICIS NVTIHSGDKK 420 LQWNCTDIEG VTSNVYPKPC ELLPEKKEKI ECPYPDDKVP IESVQLKTCS LKSFPVF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-18 | 58 | 348 | 304 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-21 | 52 | 417 | 375 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-26 | 55 | 352 | 308 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 9.0e-30 | 90 | 428 | 352 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-55 | 53 | 355 | 327 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD32865.1 | 0 | 6 | 473 | 5 | 464 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ACU17976.1 | 0 | 1 | 477 | 1 | 477 | unknown [Glycine max] |
RefSeq | XP_002327490.1 | 0 | 42 | 473 | 21 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 30 | 470 | 30 | 474 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002513653.1 | 0 | 11 | 473 | 11 | 473 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 38 | 415 | 15 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 38 | 415 | 15 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 38 | 415 | 15 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 38 | 415 | 15 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000008 | 69 | 330 | 26 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |