Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.005G022500.1 |
Family | GH28 |
Protein Properties | Length: 441 Molecular Weight: 48248.8 Isoelectric Point: 9.5066 |
Chromosome | Chromosome/Scaffold: 05 Start: 2000935 End: 2005462 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 96 | 426 | 0 |
ACSRGGVLVVPEAKIYHLKPITFSGPCHPNTAFRVYGTIRAWPVISAYGKQRLLWIMFQNLTNLRVDGGGTINGNGRKWWENSCKTNENLPCKHAPTAVT FFGCNNLIVTNLRLKNAQQMHVRFQKCNNVTASNLILRAPGNSPNTDGIHVTETKNIMISNSSIGTGDDCISIVSGSQNVRVTDVTCGPGHGISIGSLGA GNSKAQVSNVLVNRATITGTTNGVRIKTWQGGSGYAKNIKFENIAMRNVTNPIIVDQNYCDQEKPCKEKVSAVQVSNIVYQNIRGTSASEVAIKFECSKS FPCKGIHFEDVVLTPHGHAASKTIATCQNVR |
Full Sequence |
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Protein Sequence Length: 441 Download |
MRMSPQSGVI HSLFITMFLS FGVCFGSFLE DTYHLTNYQH YSIKPNNEHF GSIMKRAYGS 60 TPSARPQRRI SVDDFGAKAN DGRDDTEAFE KAWNEACSRG GVLVVPEAKI YHLKPITFSG 120 PCHPNTAFRV YGTIRAWPVI SAYGKQRLLW IMFQNLTNLR VDGGGTINGN GRKWWENSCK 180 TNENLPCKHA PTAVTFFGCN NLIVTNLRLK NAQQMHVRFQ KCNNVTASNL ILRAPGNSPN 240 TDGIHVTETK NIMISNSSIG TGDDCISIVS GSQNVRVTDV TCGPGHGISI GSLGAGNSKA 300 QVSNVLVNRA TITGTTNGVR IKTWQGGSGY AKNIKFENIA MRNVTNPIIV DQNYCDQEKP 360 CKEKVSAVQV SNIVYQNIRG TSASEVAIKF ECSKSFPCKG IHFEDVVLTP HGHAASKTIA 420 TCQNVRYVNR GKFLPPCSNS * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 5.0e-90 | 70 | 426 | 363 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-102 | 70 | 437 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-120 | 97 | 425 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 8.0e-140 | 46 | 436 | 396 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-146 | 18 | 438 | 430 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC26512.1 | 0 | 13 | 437 | 19 | 458 | polygalacturonase precursor [Cucumis melo] |
GenBank | ABC70314.1 | 0 | 3 | 438 | 1 | 439 | polygalacturonase precursor [Glycine max] |
RefSeq | XP_002282759.1 | 0 | 13 | 438 | 10 | 442 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002313308.1 | 0 | 68 | 438 | 7 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 24 | 437 | 23 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-27 | 139 | 394 | 91 | 349 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-22 | 145 | 425 | 59 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-22 | 145 | 425 | 59 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-22 | 145 | 425 | 59 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-22 | 145 | 425 | 59 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |