Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.005G039700.1 |
Family | GH28 |
Protein Properties | Length: 369 Molecular Weight: 39584.9 Isoelectric Point: 6.9194 |
Chromosome | Chromosome/Scaffold: 05 Start: 3892323 End: 3894354 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 345 | 0 |
GAITFQINGGTLDGQGTATRQKCLNNSCQILFTSMDLDFITNGRIENLHSFDSKGGHFIVFGSANMTFTKLSLISPANNRNTDGIKISHTNGINITSVTI ATGDDCVAMISGAKNVRITDVFCGPGHGISVGSLGGGNPLELPVEDIVVMNCTFNGSSNGVQIKTWPFPLKTPLKVSNFTYEDIVMINVQNPIFINQQYC PEHNCDLSKSSSVQISNVSYKNIRGSSATDVAVNFNCSKEVPCQDVTVEDIDLMSSGGKGRQKLSNFCFNVKGS |
Full Sequence |
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Protein Sequence Length: 369 Download |
MCAKYLFMLC LLAYSAEAQT KIFNVKDYGA SADGSTDNTW SDACKWKGDT NVVIPEGTYM 60 LRSVIFNGPC NGAITFQING GTLDGQGTAT RQKCLNNSCQ ILFTSMDLDF ITNGRIENLH 120 SFDSKGGHFI VFGSANMTFT KLSLISPANN RNTDGIKISH TNGINITSVT IATGDDCVAM 180 ISGAKNVRIT DVFCGPGHGI SVGSLGGGNP LELPVEDIVV MNCTFNGSSN GVQIKTWPFP 240 LKTPLKVSNF TYEDIVMINV QNPIFINQQY CPEHNCDLSK SSSVQISNVS YKNIRGSSAT 300 DVAVNFNCSK EVPCQDVTVE DIDLMSSGGK GRQKLSNFCF NVKGSSFGKQ IPPSCVASNR 360 FVSAPLPN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 7.0e-46 | 21 | 359 | 376 | + polygalacturonase | ||
PLN02155 | PLN02155 | 7.0e-55 | 6 | 356 | 393 | + polygalacturonase | ||
PLN02793 | PLN02793 | 6.0e-56 | 21 | 359 | 383 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-57 | 51 | 338 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 6.0e-72 | 18 | 355 | 378 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173158.1 | 0 | 2 | 357 | 4 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 21 | 356 | 33 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002273801.1 | 0 | 6 | 356 | 13 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300425.1 | 0 | 21 | 355 | 1 | 367 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314146.1 | 0 | 4 | 358 | 5 | 394 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 0.000000000000003 | 151 | 337 | 151 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000003 | 151 | 337 | 151 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000003 | 151 | 337 | 151 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000003 | 151 | 337 | 151 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 0.000000000000003 | 151 | 337 | 151 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |