| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.005G177000.1 |
| Family | GH28 |
| Protein Properties | Length: 402 Molecular Weight: 43132.2 Isoelectric Point: 8.7827 |
| Chromosome | Chromosome/Scaffold: 05 Start: 39993433 End: 39997391 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 50 | 388 | 0 |
| DVCQSKSHISQLIIPAKRTFMLKPTTFSGPCKSNYTYIQLSGNIVAPKTKSEYSGFHTNTWLGFSFIDGLIISGKGSIDGRGSIWWQQPCLGNSQPGTTC RPPTAVTFNRCNRLQLKGYTSINPARSHMTLTSCQKGTLSNLRLVAPGTSPNTDGIDISGSRDIQVLNSSIATGDDCIAISAGSSKITISGITCGPGHGI SIGSLGTRGETDIVEDVHVENCTLTETLTGVRIKTWQGGAGFARRISFEKIKFVRANNPIIIDQFYCPHRSDCQNKTQSIKVSDITYKGIVGTSLTDKAI NLSCDENVGCSNIVLDHVYITSAVPGQKVFSFCHNAHGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 402 Download |
| MEFFFTVLII LSVIAPGLSS TTTTFNVLQY GAVGDGQTND SPAFLKAWKD VCQSKSHISQ 60 LIIPAKRTFM LKPTTFSGPC KSNYTYIQLS GNIVAPKTKS EYSGFHTNTW LGFSFIDGLI 120 ISGKGSIDGR GSIWWQQPCL GNSQPGTTCR PPTAVTFNRC NRLQLKGYTS INPARSHMTL 180 TSCQKGTLSN LRLVAPGTSP NTDGIDISGS RDIQVLNSSI ATGDDCIAIS AGSSKITISG 240 ITCGPGHGIS IGSLGTRGET DIVEDVHVEN CTLTETLTGV RIKTWQGGAG FARRISFEKI 300 KFVRANNPII IDQFYCPHRS DCQNKTQSIK VSDITYKGIV GTSLTDKAIN LSCDENVGCS 360 NIVLDHVYIT SAVPGQKVFS FCHNAHGTAT HTKPSVKCLL K* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 5.0e-87 | 3 | 385 | 392 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 2.0e-88 | 21 | 369 | 352 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 5.0e-105 | 20 | 399 | 384 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 6.0e-110 | 1 | 399 | 399 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-110 | 25 | 390 | 367 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD28723.1 | 0 | 9 | 401 | 1 | 392 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| EMBL | CAN62658.1 | 0 | 2 | 401 | 27 | 435 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI36306.1 | 0 | 2 | 401 | 96 | 495 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36306.1 | 0.00000002 | 328 | 394 | 23 | 88 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002266797.1 | 0 | 17 | 401 | 10 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-18 | 121 | 371 | 113 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 3e-17 | 58 | 351 | 23 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-17 | 58 | 351 | 23 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-17 | 58 | 351 | 23 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-17 | 58 | 351 | 23 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
