Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.006G028800.1 |
Family | GH28 |
Protein Properties | Length: 457 Molecular Weight: 49392.8 Isoelectric Point: 8.4393 |
Chromosome | Chromosome/Scaffold: 06 Start: 12268919 End: 12275185 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 85 | 432 | 0 |
KRPGGTVLYVPQGVYVTESFNLTSHMTLYLAAGAVIKAQQDSRNWPLIAPLPSYGRGRELPGGRYISFIHGDGLTDVVITGENGTIDGQGDMWWNMWRKR TLKYTRPSLVEFVNSQDIIISNLIFKNSPFWNIHPVYCNNVVVRYVTILAPRDSPNTDGVDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSS GITIRRLTGSSPFAGIAVGSETSGGVENVLAENINLFNMGVGIHIKTNKGRGGFIKNITVAHVYVENARQGIKIAGDVGGHPDEKYNPDALPVVKGITIR NVWGVKVNRAGLINGLKNSPFTDVCLSVINFHGMAGSRAPNWKCSDVS |
Full Sequence |
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Protein Sequence Length: 457 Download |
MLLSPFLTLT ILLFFSSSSS SSSSSSSSSS SSVSAIYSTP TCSNIVPFKN RTDRISITDY 60 GGVGDGRTLN TKAFREAVYR IEHLKRPGGT VLYVPQGVYV TESFNLTSHM TLYLAAGAVI 120 KAQQDSRNWP LIAPLPSYGR GRELPGGRYI SFIHGDGLTD VVITGENGTI DGQGDMWWNM 180 WRKRTLKYTR PSLVEFVNSQ DIIISNLIFK NSPFWNIHPV YCNNVVVRYV TILAPRDSPN 240 TDGVDPDSSS NVCIEDSYIS TGDDLVAVKS GWDEYGIAYG RPSSGITIRR LTGSSPFAGI 300 AVGSETSGGV ENVLAENINL FNMGVGIHIK TNKGRGGFIK NITVAHVYVE NARQGIKIAG 360 DVGGHPDEKY NPDALPVVKG ITIRNVWGVK VNRAGLINGL KNSPFTDVCL SVINFHGMAG 420 SRAPNWKCSD VSGFAYQVSP WPCSQLHSQE PGSCAI* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02188 | PLN02188 | 3.0e-22 | 38 | 372 | 349 | + polygalacturonase/glycoside hydrolase family protein |
PLN02218 | PLN02218 | 5.0e-28 | 55 | 417 | 375 | + polygalacturonase ADPG |
PLN03003 | PLN03003 | 1.0e-28 | 52 | 358 | 319 | + Probable polygalacturonase At3g15720 |
pfam00295 | Glyco_hydro_28 | 3.0e-31 | 152 | 431 | 290 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
COG5434 | PGU1 | 5.0e-56 | 56 | 380 | 356 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 7 | 448 | 4 | 433 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 41 | 455 | 29 | 444 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 7 | 448 | 4 | 433 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 51 | 455 | 4 | 409 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 32 | 455 | 14 | 443 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5.00264e-43 | 55 | 411 | 28 | 406 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5.00264e-43 | 55 | 411 | 28 | 406 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5.00264e-43 | 55 | 411 | 28 | 406 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5.00264e-43 | 55 | 411 | 28 | 406 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-17 | 98 | 358 | 51 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |