Basic Information | |
---|---|
Species | Phaseolus vulgaris |
Cazyme ID | Phvul.006G047000.1 |
Family | GH13 |
Protein Properties | Length: 900 Molecular Weight: 103946 Isoelectric Point: 6.6821 |
Chromosome | Chromosome/Scaffold: 06 Start: 16048871 End: 16060227 |
Description | Alpha amylase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH13 | 408 | 741 | 2.2e-24 |
GSDPKISSFNDFTDEVLPYIKDAGYNAIQLIGIVEHKDYFTVGYRVTNYFAVSSRYGIPEDFKRLVDEAHGLGLLVFLEIVHSYAAADEMVGLSMFDGSN DCFFRSGKRGQHKFWGTRMFKYGDPDVLHFLVSNLNWWIVEYQIDGFQFHSVSSMLYTHNGFASFTGDLEEYCNQYVDKDALVYLILANEILHSLHPNIV TIAEDATFYPGLCEPTSQGGLGFDYYVNLSVPDMWSTLLDSVPDYEWNMTKIVNTLVSKREYADKMLTYAENHNQSISGRRSFAEILFGEIDENSHHYKE SLLRGSSLHKMIRLITLTIGGRAYLNFMGNEFGH |
Full Sequence |
---|
Protein Sequence Length: 900 Download |
MSTLSIPFKF YFPPTTATSF PPSQTKPQNL TFQRRTRTTT KTACAASENP KKRQKPKKKQ 60 TETKTETTSD DGEKGIDPAG FLEKRGISHK AFALFLRERY KILKDIKDEI LKRHANFMIL 120 ASGFELLGMH RHPEHRVDYM EWAPGARYCA IVGDFNDWSP TENCAREHYF GHDDYGYWFI 180 ILQDKLREGE EPDKYYFQMY NYADDYDKGD SGITLEEILK KANDEYWEPG EDRYLNNRYE 240 GPVKLYEQIF GPNGPQTIED IPDVPDPKTR YKAWAAEHGP SRTAAMDSGK EYDIYNVIVD 300 PEWHEKMRSL KPPIAYWFET RKGRKAWMKK YSPSIPHGSK YRVYFNTPNG PLERVPAWAT 360 YVQPEVDGRQ AYAIHWEPPP EQAYKWKNAS PKVPTSLRIY EAHVGISGSD PKISSFNDFT 420 DEVLPYIKDA GYNAIQLIGI VEHKDYFTVG YRVTNYFAVS SRYGIPEDFK RLVDEAHGLG 480 LLVFLEIVHS YAAADEMVGL SMFDGSNDCF FRSGKRGQHK FWGTRMFKYG DPDVLHFLVS 540 NLNWWIVEYQ IDGFQFHSVS SMLYTHNGFA SFTGDLEEYC NQYVDKDALV YLILANEILH 600 SLHPNIVTIA EDATFYPGLC EPTSQGGLGF DYYVNLSVPD MWSTLLDSVP DYEWNMTKIV 660 NTLVSKREYA DKMLTYAENH NQSISGRRSF AEILFGEIDE NSHHYKESLL RGSSLHKMIR 720 LITLTIGGRA YLNFMGNEFG HPKRVEFPSS SNNNSYLLAN RCWDLLAKDG VHRDLFSFDK 780 DMMKLDENQR VLSRVFPNIH HVNDSSMVIS YIRGPLVFIF NFHPKESYDS YSIGVEEAGE 840 YQIIMNTDEI KYGGQGKLKE NQYFLKTISK RVDGLRNCLE VSLPSRTAQV YKLKRILRI* 900 |
Functional Domains Download unfiltered results here | ||||||
---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02447 | PLN02447 | 7.0e-9 | 121 | 184 | 64 | + 1,4-alpha-glucan-branching enzyme |
cd11321 | AmyAc_bac_euk_BE | 2.0e-172 | 380 | 780 | 411 | + Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes. Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. |
PLN02960 | PLN02960 | 0 | 70 | 899 | 836 | + alpha-amylase |
PLN03244 | PLN03244 | 0 | 71 | 899 | 837 | + alpha-amylase; Provisional |
PLN02447 | PLN02447 | 0 | 332 | 891 | 569 | + 1,4-alpha-glucan-branching enzyme |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0003824 | catalytic activity |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0043169 | cation binding |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB02827.1 | 0 | 1 | 899 | 1 | 903 | starch-branching enzyme-like protein [Arabidopsis thaliana] |
EMBL | CBI26672.1 | 0 | 1 | 899 | 1 | 896 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_001154629.1 | 0 | 1 | 899 | 1 | 899 | alpha-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
RefSeq | XP_002278858.1 | 0 | 1 | 899 | 1 | 866 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002529457.1 | 0 | 2 | 890 | 3 | 892 | 1,4-alpha-glucan branching enzyme, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3amk_A | 0 | 333 | 858 | 114 | 650 | A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L |
PDB | 3aml_A | 0 | 333 | 858 | 114 | 650 | A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L |
PDB | 3vu2_B | 0 | 333 | 858 | 114 | 650 | A Chain A, Structure Of The Starch Branching Enzyme I (bei) Complexed With Maltopentaose From Oryza Sativa L |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
BF272517 | 278 | 354 | 631 | 0 |
CO104525 | 273 | 381 | 653 | 0 |
JG636329 | 270 | 341 | 610 | 0 |
DY965821 | 293 | 269 | 555 | 0 |
EH718768 | 263 | 359 | 621 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|
![]() |