y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.006G147500.1 |
Family | PL1 |
Protein Properties | Length: 399 Molecular Weight: 43359.1 Isoelectric Point: 6.3426 |
Chromosome | Chromosome/Scaffold: 06 Start: 26070018 End: 26071839 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 121 | 319 | 0 |
TFGKDMVITLKNELMLNSYKTIDGRGAKVEIANGACITIQGVSHVIIHGIGIHDCKPGVGGMVRSTPEHVGYREGSDGDAISIFASSNVWIDHCFLARST DGLIDVIHASTAVTISNNYFTHHDKVMLLGHSDEYSADKVMKVTVAFNRFASDLIERMPRVRFGYAHVVNNRYDEWVMYAIGGSANPTIFSEGNYFTAS |
Full Sequence |
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Protein Sequence Length: 399 Download |
MATLTILLVL SACILPTLAS PLNNRDSTKE FNALSPIPNY ITKSSPQNAV MNTIDSCWRA 60 KTNWASNRQS LADCAIGFGK DAIGGKFGDV YEVTDPSDDP VDPKPGTLRY GAIQTEPLWI 120 TFGKDMVITL KNELMLNSYK TIDGRGAKVE IANGACITIQ GVSHVIIHGI GIHDCKPGVG 180 GMVRSTPEHV GYREGSDGDA ISIFASSNVW IDHCFLARST DGLIDVIHAS TAVTISNNYF 240 THHDKVMLLG HSDEYSADKV MKVTVAFNRF ASDLIERMPR VRFGYAHVVN NRYDEWVMYA 300 IGGSANPTIF SEGNYFTASD DSAAKQVTKR ESSEGWNNWK WRSFGDEFLN GAYFVPSGYG 360 SCTPLYSDAQ TFIAAKASMV PFLTLNAGPL NCVVGKAC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-25 | 186 | 316 | 143 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-62 | 131 | 316 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-73 | 125 | 320 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 1 | 398 | 1 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 8 | 398 | 7 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317132.1 | 0 | 1 | 398 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 1 | 398 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 36 | 398 | 30 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 52 | 388 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 52 | 388 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-20 | 126 | 316 | 56 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 4e-18 | 131 | 320 | 73 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 5e-17 | 144 | 317 | 140 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |