Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.006G147600.1 |
Family | PL1 |
Protein Properties | Length: 373 Molecular Weight: 40327.4 Isoelectric Point: 9.2803 |
Chromosome | Chromosome/Scaffold: 06 Start: 26075224 End: 26076819 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 94 | 293 | 0 |
IIFAKDMTIKLKNELIMNSYKTIDGRGAKVEITNGPCITIQGVSHVIIHGISIHDCKPSKAGLVMSTPSHVGHRQGSDGDGISIFASSNVWIDHCFFARC FDGLIDVIHASTAITISNNYFTQHDKVMLLGHSDVYTADKIMKVTIAFNRFASGLIERMPRVRFGYAHVVNNKYDAWKMYAIGGSSNPTILSEANYYVAP |
Full Sequence |
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Protein Sequence Length: 373 Download |
MATSSLLLFS CFILLLASSS QSAVLNKIDS CRLAKSNWAS NRQALADCVI GFGKDAIGGK 60 YGAIYKVTDP SDDPISPKPG TLRYGVVQTQ PLWIIFAKDM TIKLKNELIM NSYKTIDGRG 120 AKVEITNGPC ITIQGVSHVI IHGISIHDCK PSKAGLVMST PSHVGHRQGS DGDGISIFAS 180 SNVWIDHCFF ARCFDGLIDV IHASTAITIS NNYFTQHDKV MLLGHSDVYT ADKIMKVTIA 240 FNRFASGLIE RMPRVRFGYA HVVNNKYDAW KMYAIGGSSN PTILSEANYY VAPNDPASKQ 300 VTKREMKGKL KSWKWRSSKD AFLNGAYFVP SGYGSCDPNY SPSQSFTAAP ASLVPAITLN 360 AGPLTCVAGK AC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 9.0e-27 | 173 | 362 | 203 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-61 | 105 | 290 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-74 | 99 | 294 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 9 | 372 | 34 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317132.1 | 0 | 19 | 372 | 39 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 6 | 372 | 7 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518441.1 | 0 | 19 | 372 | 24 | 377 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002518442.1 | 0 | 24 | 372 | 42 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 26 | 365 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 26 | 365 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-18 | 144 | 292 | 73 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 2e-17 | 118 | 290 | 140 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 3e-17 | 103 | 294 | 71 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |