| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.007G009300.1 |
| Family | PL1 |
| Protein Properties | Length: 335 Molecular Weight: 37572.6 Isoelectric Point: 7.4414 |
| Chromosome | Chromosome/Scaffold: 07 Start: 656464 End: 659794 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 64 | 243 | 0 |
| IVFEVSGTIQLSSYLSVSSYKTIDGRGQRVKLTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCTLRDYDDGLIDITRQSTDITVSR CCFGQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWTVYAVCASVESQIYSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 335 Download |
| MAGIQMLPYG DVDSNLRAMA GRAEGFGRHA IGGLNGSLYL VTTLADDGPG SLREGCRRIE 60 PLWIVFEVSG TIQLSSYLSV SSYKTIDGRG QRVKLTGKGL RLKECEHIIV CNLEFEGGRG 120 HDVDGIQIKP NSRHIWIDRC TLRDYDDGLI DITRQSTDIT VSRCCFGQHD KTMLIGADPT 180 HVGDRCIRVT IHHCFFDGTR QRQPRVRFGK VHLYNNYTRN WTVYAVCASV ESQIYSQCNI 240 YEAGTKKKTF EFYTEKAADK EEQKSGSIVS EGDILLNGAQ PCLVTQNREV AMFHPSEYYS 300 TWTMEAAAHS LREVLQLCTG WQSICRPVDR MVLN* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 6.0e-39 | 65 | 239 | 195 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 6.0e-44 | 32 | 244 | 232 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 9.0e-67 | 78 | 244 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 7 | 332 | 58 | 383 | unknown [Populus trichocarpa] |
| EMBL | CAB75748.1 | 0 | 7 | 332 | 4 | 339 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191074.2 | 0 | 7 | 332 | 4 | 329 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002311134.1 | 0 | 4 | 328 | 1 | 325 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526780.1 | 0 | 7 | 315 | 4 | 312 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 3e-40 | 13 | 307 | 15 | 335 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 3e-40 | 13 | 307 | 15 | 335 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-28 | 31 | 241 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 3e-26 | 80 | 241 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 3e-20 | 60 | 242 | 46 | 247 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JG177860 | 305 | 24 | 328 | 0 |
| DY275282 | 330 | 7 | 335 | 0 |
| DW066041 | 301 | 28 | 328 | 0 |
| DY277275 | 310 | 7 | 316 | 0 |
| DY277275 | 30 | 306 | 335 | 0.081 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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