y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.007G024400.1 |
Family | PL1 |
Protein Properties | Length: 494 Molecular Weight: 53763.4 Isoelectric Point: 6.4259 |
Chromosome | Chromosome/Scaffold: 07 Start: 1763697 End: 1767760 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 131 | 337 | 0 |
IQDEPLWIVFAADMTINLKHELIFNSFKTVDGRGANVHVTGHGCITLQYVSDVIIHNIHVHHCTPSGNTNIRASPTHVGWRGRSDGDGISIFSSRKIWID HCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQ GNRYTAP |
Full Sequence |
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Protein Sequence Length: 494 Download |
MLPITCILLM CLLSSFSPPI EALLNLTVLP HQHPHPESIV HELQRKVNVS LWRRQTLSKD 60 QQASCLTGNP IDDCWRCDPN WGANRQKLAE CGIGFGKDTV GGKGGQIYVV TDSSDRDPAN 120 PVPGTLRHAV IQDEPLWIVF AADMTINLKH ELIFNSFKTV DGRGANVHVT GHGCITLQYV 180 SDVIIHNIHV HHCTPSGNTN IRASPTHVGW RGRSDGDGIS IFSSRKIWID HCSLSYCTDG 240 LIDAIMGSTA ITISNNHFAH HDEVMLLGHN DKYSPDRGMQ VTIAFNHFGE GLVQRMPRCR 300 LGYIHVVNND FTQWEMYAIG GSANPTINSQ GNRYTAPSNP DAKEVTKRVE TDDREWSGWN 360 WRTEGDVMVN GAFFVPSGAG MSAQYAEATS VQPKSAVQID QLTMYSGVFG DPRDNGDLYP 420 GFNGGGTVTG ATSKGNSAGS SDDGDFFGMI FRGSSSHAAP PSPPSSSTVF VTTFLSLLII 480 LILDTSTTNH PFL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-27 | 156 | 349 | 206 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-68 | 139 | 334 | 204 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-75 | 143 | 338 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_196051.2 | 0 | 6 | 483 | 18 | 508 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265853.1 | 0 | 1 | 415 | 115 | 531 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268818.1 | 0 | 1 | 461 | 1 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 2 | 413 | 3 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 1 | 464 | 1 | 465 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 69 | 408 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 69 | 408 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-19 | 99 | 334 | 21 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.00000000000004 | 181 | 383 | 114 | 330 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.00000000000004 | 181 | 383 | 114 | 330 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |