Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.007G074300.1 |
Family | GH28 |
Protein Properties | Length: 459 Molecular Weight: 50454.7 Isoelectric Point: 8.4638 |
Chromosome | Chromosome/Scaffold: 07 Start: 6804799 End: 6807915 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 414 | 0 |
HASDGGAQLIVPPGKWLTGPFNLTSHFTLFLHKNAIILASQDESEWPHLPALPSYGRGRDAPAGRFSSLISGTHLTDVVITGDNGKIDGQGAYWWEKFHK KQLNLTRPYMIELMYSDQIQISSLTLLNSPSYFIHPIYSSNIIMQGLTINAPRGSPNTDGIDPDSCRNVRIEDCKIVSGDDCISIKSGWDEYGIKVAMPS EHIVIRRITCSEMSGGISDVRAEDLIAINTESAVRIKTAVGRGGYVKDIFVRRMNLTTMKYVFWMTGSYGSHPDPHYDPKALPKITGINYADVAASDVKY SARLDGISNDPFTNICISNVSIQLNEQRKKLQWNCTNVSG |
Full Sequence |
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Protein Sequence Length: 459 Download |
MKMCPRHRNS FVIGVISLVL ILGSENVKVV NGGSEYEAIN CRKHSAVLTD FGGVGDGVKS 60 NTKAFRNAIR NLSQHASDGG AQLIVPPGKW LTGPFNLTSH FTLFLHKNAI ILASQDESEW 120 PHLPALPSYG RGRDAPAGRF SSLISGTHLT DVVITGDNGK IDGQGAYWWE KFHKKQLNLT 180 RPYMIELMYS DQIQISSLTL LNSPSYFIHP IYSSNIIMQG LTINAPRGSP NTDGIDPDSC 240 RNVRIEDCKI VSGDDCISIK SGWDEYGIKV AMPSEHIVIR RITCSEMSGG ISDVRAEDLI 300 AINTESAVRI KTAVGRGGYV KDIFVRRMNL TTMKYVFWMT GSYGSHPDPH YDPKALPKIT 360 GINYADVAAS DVKYSARLDG ISNDPFTNIC ISNVSIQLNE QRKKLQWNCT NVSGVTRNVT 420 PPTCELLPEK GPLQCPFPTN SLPIESVKLK SCNTKVFF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 9.0e-21 | 47 | 424 | 391 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-23 | 48 | 424 | 398 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-29 | 48 | 421 | 389 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 7.0e-30 | 144 | 412 | 284 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-51 | 46 | 337 | 324 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD32865.1 | 0 | 5 | 455 | 4 | 463 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ACU17976.1 | 0 | 1 | 455 | 1 | 472 | unknown [Glycine max] |
RefSeq | XP_002278930.1 | 0 | 35 | 453 | 42 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327490.1 | 0 | 15 | 453 | 1 | 449 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 1 | 453 | 1 | 470 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 48 | 397 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 48 | 397 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 48 | 397 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 48 | 397 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000007 | 90 | 323 | 52 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |