y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.007G076400.1 |
Family | GH28 |
Protein Properties | Length: 321 Molecular Weight: 33635.4 Isoelectric Point: 7.0825 |
Chromosome | Chromosome/Scaffold: 07 Start: 7067988 End: 7073384 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 115 | 268 | 1.4013e-45 |
GVLIQNVNCGPGHGISIGSLGKYKEEEPVEGVTVKGCTLKGTTNGVRIKTWPNEPGTITVNDMKFEDITMDNVQNPVIIDQEYCPNNQCSKGTPSKVKIS KVSIKGIKGTSATKEGIILACSSGVPCEGVEIGDVTLTYNGAPVTATCTNVKPT |
Full Sequence |
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Protein Sequence Length: 321 Download |
MKFSAIILLL SIFNLICLTQ SANLDISKFG GKPDTDIAEQ ILIYQKFGGK PNTDIAKALT 60 SAWAEACAST SAVKIVIPSG TYQMTHVEVK GPCKAPIEIQ VDGTLKAPEK PEAVGVLIQN 120 VNCGPGHGIS IGSLGKYKEE EPVEGVTVKG CTLKGTTNGV RIKTWPNEPG TITVNDMKFE 180 DITMDNVQNP VIIDQEYCPN NQCSKGTPSK VKISKVSIKG IKGTSATKEG IILACSSGVP 240 CEGVEIGDVT LTYNGAPVTA TCTNVKPTIT GKAPACGEAA TDTKESDSTT DKKSSDSATD 300 KKSSDSATDK KESTDKKAKQ * 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 8.0e-5 | 67 | 186 | 135 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-10 | 1 | 107 | 111 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-32 | 111 | 264 | 155 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-43 | 116 | 266 | 151 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-44 | 115 | 271 | 160 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO62938.1 | 1e-24 | 1 | 114 | 1 | 97 | polygalactorunase PG11 precursor [Medicago sativa] |
GenBank | AAO62938.1 | 0 | 116 | 276 | 231 | 391 | polygalactorunase PG11 precursor [Medicago sativa] |
EMBL | CAA72003.1 | 0 | 116 | 280 | 229 | 393 | polygalacturonase [Medicago sativa] |
Swiss-Prot | Q40312 | 4e-28 | 1 | 114 | 1 | 97 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Swiss-Prot | Q40312 | 0 | 116 | 276 | 231 | 391 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000002 | 110 | 197 | 234 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000002 | 123 | 224 | 193 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000002 | 123 | 224 | 193 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000002 | 123 | 224 | 193 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000002 | 123 | 224 | 193 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |