| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.007G076500.1 |
| Family | GH28 |
| Protein Properties | Length: 302 Molecular Weight: 31960.4 Isoelectric Point: 8.9438 |
| Chromosome | Chromosome/Scaffold: 07 Start: 7102381 End: 7104052 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 47 | 183 | 6e-29 |
| WAEACASTSAVKIVIPSGTYQMTHVEVKGPCKAPIEIQVDGTLKAPEKPEAVGSDQWLRIGYVNSLTISGKGVFDGQGATAWKQNECAKKFDCKQLGMNF GFNFINNSIVRDITSKDSKHFHVNVLGCNNFTFDGFK | |||
| Full Sequence |
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| Protein Sequence Length: 302 Download |
| MKFSTIILLL SFFIVNNFVL TQSANLDISK FGGKPNTDIA KALTSAWAEA CASTSAVKIV 60 IPSGTYQMTH VEVKGPCKAP IEIQVDGTLK APEKPEAVGS DQWLRIGYVN SLTISGKGVF 120 DGQGATAWKQ NECAKKFDCK QLGMNFGFNF INNSIVRDIT SKDSKHFHVN VLGCNNFTFD 180 GFKTPSKVKI SKVSIKGIKG TSATKEGIIL ACSSGVPCEG VEIGDVTLTY NGAPVTATCT 240 NVKPTITGKA PACGEAATDT KESDSATDKK SSDSATDKKS SDSATDKKES TDKKTDKKAK 300 Q* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 0.002 | 201 | 248 | 51 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 0.0001 | 201 | 243 | 43 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02155 | PLN02155 | 5.0e-19 | 1 | 176 | 179 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-28 | 51 | 183 | 133 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-39 | 1 | 183 | 197 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO62938.1 | 0 | 1 | 182 | 1 | 186 | polygalactorunase PG11 precursor [Medicago sativa] |
| GenBank | AAO62938.1 | 7e-22 | 183 | 253 | 321 | 391 | polygalactorunase PG11 precursor [Medicago sativa] |
| GenBank | ACK38189.1 | 0 | 1 | 224 | 1 | 216 | unknown [Medicago truncatula] |
| Swiss-Prot | Q40312 | 0 | 1 | 182 | 1 | 186 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| Swiss-Prot | Q40312 | 1e-21 | 183 | 253 | 321 | 391 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 23 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EV264807 | 184 | 1 | 183 | 0 |
| FK000679 | 184 | 1 | 183 | 0 |
| EV263402 | 184 | 1 | 183 | 0 |
| FG990977 | 184 | 1 | 183 | 0 |
| EV267125 | 184 | 1 | 183 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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