y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.007G076600.1 |
Family | GH28 |
Protein Properties | Length: 275 Molecular Weight: 28482.8 Isoelectric Point: 5.4295 |
Chromosome | Chromosome/Scaffold: 07 Start: 7109855 End: 7111462 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 28 | 222 | 0 |
SAPGDSHNTDGIHIGRSTGVNVLNTDIATGDDCVSLSDGSRQVLIQNVNCGPGHGISIGSLGKYKEEEPVEGITVKGCTLKGTTNGVRIKTWPNEPGTIT VNDMKFEDITMDNVQNPVIIDQEYCPNNQCSKGTPSKVKISKVSIKGIKGTSATKEGIILACSSGVPCEGVEIGDVTLTYNGAPVTATCTNVKPT |
Full Sequence |
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Protein Sequence Length: 275 Download |
NLDISKFGGK PNTDIAKALT SAWAEALSAP GDSHNTDGIH IGRSTGVNVL NTDIATGDDC 60 VSLSDGSRQV LIQNVNCGPG HGISIGSLGK YKEEEPVEGI TVKGCTLKGT TNGVRIKTWP 120 NEPGTITVND MKFEDITMDN VQNPVIIDQE YCPNNQCSKG TPSKVKISKV SIKGIKGTSA 180 TKEGIILACS SGVPCEGVEI GDVTLTYNGA PVTATCTNVK PTITGKAPAC GEAATDTKES 240 DSTTDKKSSD SATDKKSSDS ATDKKESTDK KAKQ* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 3.0e-48 | 27 | 216 | 191 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-48 | 27 | 218 | 193 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-61 | 27 | 220 | 194 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-64 | 27 | 225 | 201 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO62938.1 | 0 | 27 | 230 | 188 | 391 | polygalactorunase PG11 precursor [Medicago sativa] |
EMBL | CAA72003.1 | 0 | 27 | 234 | 186 | 393 | polygalacturonase [Medicago sativa] |
Swiss-Prot | Q40312 | 0.0003 | 2 | 41 | 25 | 72 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Swiss-Prot | Q40312 | 0 | 27 | 230 | 188 | 391 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-16 | 21 | 151 | 186 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 6e-16 | 34 | 178 | 151 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-16 | 34 | 178 | 151 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-16 | 34 | 178 | 151 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-16 | 34 | 178 | 151 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EV261373 | 204 | 27 | 230 | 0 |
FK000680 | 193 | 39 | 231 | 0 |
GO028264 | 198 | 33 | 230 | 0 |
FD381547 | 177 | 54 | 230 | 0 |
GO028956 | 173 | 58 | 230 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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