Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.007G077000.1 |
Family | GH28 |
Protein Properties | Length: 367 Molecular Weight: 39083.9 Isoelectric Point: 7.5665 |
Chromosome | Chromosome/Scaffold: 07 Start: 7178691 End: 7180200 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 4 | 308 | 0 |
VEVKGPCKAPIEIQVDGTIKAPPKPEDVGGEQWLRIGYVDQLTMSGNGVFDGQGATAWKQNECVKKFACKNLGMVNNEYYFQNSYKIKDSKHFHVNVLGC NNFTFDGFKVSAPGDSHNTDGIHIGRSTGVNVLNTDIATGDDCVSLGDGSRQVLIQKVNCGPGHGISIGSLGKYKEEEPVEGVTVKGCTLKGTTNGVRIK TWPNEPGTITVNDMKFEDITMDNVQNPIIIDQEYCPNNQCSKGSPSKVKISKVSFKGIKGTSATKEGIILACSSGVPCEGVEIGDVTLTYNGGPIIAKCS NVKPT |
Full Sequence |
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Protein Sequence Length: 367 Download |
MTHVEVKGPC KAPIEIQVDG TIKAPPKPED VGGEQWLRIG YVDQLTMSGN GVFDGQGATA 60 WKQNECVKKF ACKNLGMVNN EYYFQNSYKI KDSKHFHVNV LGCNNFTFDG FKVSAPGDSH 120 NTDGIHIGRS TGVNVLNTDI ATGDDCVSLG DGSRQVLIQK VNCGPGHGIS IGSLGKYKEE 180 EPVEGVTVKG CTLKGTTNGV RIKTWPNEPG TITVNDMKFE DITMDNVQNP IIIDQEYCPN 240 NQCSKGSPSK VKISKVSFKG IKGTSATKEG IILACSSGVP CEGVEIGDVT LTYNGGPIIA 300 KCSNVKPTIT GKAPACGDGA TDTKQSDSAT DKKQSDSTTD KKQSGSTTDK KESTDKKQSS 360 DKKQKE* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 2.0e-64 | 4 | 306 | 312 | + polygalacturonase ADPG |
PLN02155 | PLN02155 | 9.0e-69 | 8 | 304 | 301 | + polygalacturonase |
PLN02793 | PLN02793 | 7.0e-73 | 4 | 296 | 310 | + Probable polygalacturonase |
pfam00295 | Glyco_hydro_28 | 5.0e-99 | 7 | 306 | 304 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02188 | PLN02188 | 3.0e-99 | 4 | 311 | 315 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO62938.1 | 0 | 1 | 316 | 67 | 391 | polygalactorunase PG11 precursor [Medicago sativa] |
DDBJ | BAA89477.1 | 0 | 1 | 317 | 71 | 392 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 1 | 317 | 71 | 392 | polygalacturonase [Salix gilgiana] |
EMBL | CAA72003.1 | 0 | 1 | 320 | 69 | 393 | polygalacturonase [Medicago sativa] |
Swiss-Prot | Q40312 | 0 | 1 | 316 | 67 | 391 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 6e-18 | 1 | 305 | 23 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-18 | 1 | 305 | 23 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-18 | 1 | 305 | 23 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-18 | 1 | 305 | 23 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 6e-18 | 1 | 305 | 23 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO028264 | 219 | 98 | 316 | 0 |
EV261373 | 212 | 105 | 316 | 0 |
FK000680 | 193 | 125 | 317 | 0 |
DW091705 | 291 | 4 | 289 | 0 |
EY196848 | 268 | 52 | 312 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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