Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.007G151200.1 |
Family | PL1 |
Protein Properties | Length: 486 Molecular Weight: 53529.1 Isoelectric Point: 6.0929 |
Chromosome | Chromosome/Scaffold: 07 Start: 37275737 End: 37278530 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 138 | 338 | 0 |
LWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTESDGDGVSIFSSRDIWIDHCTLS RCKDGLIDAVMGSTAITISNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGEDLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGRPTINSQGNRYT A |
Full Sequence |
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Protein Sequence Length: 486 Download |
MVQTTYIFLF FSVLPSFLPH GTAKLNLTLP GQHPDPEAVA TEVHRRVNAS MGRREMLGLS 60 EKEVASCLTG NPIDDCWKCD PDWANNRQRL ADCGIGFGQN AKGGKGGQFY IVTDSSDEDA 120 VNPKPGTLRY AVIQNEPLWI VFPSNMMIKL SQELIFNSYK TIDGRGADVH IVGGGCITLQ 180 YISNVIIHNI HIHHCHPSGN TNVRSSPEHY GYRTESDGDG VSIFSSRDIW IDHCTLSRCK 240 DGLIDAVMGS TAITISNNHF SHHNDVMLLG HSDHYLPDSA MQVTIAFNHF GEDLVQRMPR 300 CRLGYIHVVN NDFTRWEMYA IGGSGRPTIN SQGNRYTAPE NAYAKQITKR LDAGEGEWSG 360 WNWRSEGDVM LNGAFFVASG GETGAAYQNA YSVEPKNVDR ISLLTMSAGV LGVARDNNLG 420 MWTRGPNDGA VYFSDTGPEY TDDMSRSTVP LPPSPTCTLL SAFLAFFCLL FHTNYLNNTS 480 IANEL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-22 | 158 | 334 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 8.0e-56 | 152 | 336 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-64 | 145 | 339 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61400.1 | 0 | 1 | 467 | 1 | 473 | pectate lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB64222.1 | 0 | 33 | 467 | 15 | 454 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_566979.1 | 0 | 1 | 467 | 2 | 474 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265853.1 | 0 | 22 | 422 | 135 | 535 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519460.1 | 0 | 21 | 470 | 20 | 472 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 71 | 411 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 71 | 411 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-19 | 103 | 314 | 23 | 214 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000004 | 161 | 311 | 135 | 299 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3krg_A | 0.000000000005 | 161 | 313 | 130 | 295 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |