| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.007G160100.1 |
| Family | PL1 |
| Protein Properties | Length: 369 Molecular Weight: 41013.5 Isoelectric Point: 8.0177 |
| Chromosome | Chromosome/Scaffold: 07 Start: 38715140 End: 38717984 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 100 | 279 | 0 |
| IVFEVSGTIHLSSYLNVSSHKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCTLADYDDGLIDITRESTDITISR CHFLQHDKTILIGADPSHIDDRCMRVTIHHCFFNGTRQRHPRVRFAKVHLYNNYIRNWGIYAACAGVEAQIFSQHNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 369 Download |
| MGNAHGHRHR KHPNSVPPPH KYDHPPPFPT PPPPIANSSM LSLPYTHVDT TLRALAAQAE 60 GFGRFAVGGL HGPLHRVTSL ADDGPGSLRE ACRGKEPLWI VFEVSGTIHL SSYLNVSSHK 120 TIDGRGQRIK LTGKGLRLKE CEHVIICNLE FEGGRGHDVD AIQIKPNSKH IWIDRCTLAD 180 YDDGLIDITR ESTDITISRC HFLQHDKTIL IGADPSHIDD RCMRVTIHHC FFNGTRQRHP 240 RVRFAKVHLY NNYIRNWGIY AACAGVEAQI FSQHNIYEAG QKKVAFKYLT EKAADKEVGT 300 SGIIRSEGDL FLNGAEPGLM AENGGCKMFH PSEHYPSWTV EAPTDDLKHI LHHCTGWQSV 360 ARPADKAL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 1.0e-38 | 95 | 275 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 2.0e-51 | 67 | 350 | 303 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 2.0e-65 | 114 | 280 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 1 | 368 | 1 | 383 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 1 | 368 | 1 | 386 | unknown [Populus trichocarpa] |
| RefSeq | XP_002277576.1 | 0 | 1 | 367 | 1 | 370 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309435.1 | 0 | 42 | 368 | 4 | 330 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323433.1 | 0 | 42 | 368 | 4 | 330 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 1e-39 | 49 | 315 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 1e-39 | 49 | 315 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 5e-27 | 116 | 277 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 7e-26 | 67 | 284 | 22 | 239 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 8e-24 | 96 | 343 | 46 | 300 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY275282 | 327 | 40 | 365 | 0 |
| DW066041 | 301 | 64 | 364 | 0 |
| DY289690 | 312 | 37 | 345 | 0 |
| JG177860 | 304 | 60 | 363 | 0 |
| JG223264 | 280 | 42 | 321 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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