Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.007G165300.1 |
Family | GH28 |
Protein Properties | Length: 475 Molecular Weight: 51744.1 Isoelectric Point: 8.0392 |
Chromosome | Chromosome/Scaffold: 07 Start: 39587345 End: 39591675 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 76 | 426 | 0 |
YASKGGAQLYVPAGKWLTGSFSLSSHFTLYLNKDAVLLASQDISEWPVIEPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGAFWWQKFHK KQLKYTRPYLIELMFSDKIQISNLTLLNSPSWNVHPVYSSNIIIKGLTIIATLPSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGWPT KQLVIRRLTCISPESAAIALGSEMSGGIQDVRAEDITAIHTESGVRIKTAVGRGGYVKDIYVKGMTMHTMKWVFWMTGSYGSHADSHYDPKALPEIKGIN YRDVVADNVTMAARLEGISNDPFTGICIANVTINMAAKAKKQPWTCTDIEG |
Full Sequence |
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Protein Sequence Length: 475 Download |
MRIQVIILVC ALLLVTLLSS EVAESRKSKT GSTSFEYKAI NCRAYSASLT DFGGVGDGKT 60 SNTKAFKSAI SHLSEYASKG GAQLYVPAGK WLTGSFSLSS HFTLYLNKDA VLLASQDISE 120 WPVIEPLPSY GRGRDAAAGR YTSLIFGTNL TDVIVTGDNG TIDGQGAFWW QKFHKKQLKY 180 TRPYLIELMF SDKIQISNLT LLNSPSWNVH PVYSSNIIIK GLTIIATLPS PNTDGINPDS 240 CTNTRIEDCY IVSGDDCVAV KSGWDEYGIK FGWPTKQLVI RRLTCISPES AAIALGSEMS 300 GGIQDVRAED ITAIHTESGV RIKTAVGRGG YVKDIYVKGM TMHTMKWVFW MTGSYGSHAD 360 SHYDPKALPE IKGINYRDVV ADNVTMAARL EGISNDPFTG ICIANVTINM AAKAKKQPWT 420 CTDIEGITSG VTPKPCNSLP DQGQDNIKAC DFPADNLPID SLKLKKCAYR IKHE* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-17 | 52 | 324 | 281 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 3.0e-25 | 49 | 433 | 403 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 4.0e-26 | 46 | 437 | 407 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-27 | 151 | 436 | 300 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-60 | 47 | 342 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 23 | 473 | 40 | 489 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
GenBank | AAP33475.1 | 0 | 1 | 469 | 1 | 470 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | XP_002277736.1 | 0 | 23 | 473 | 28 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 17 | 473 | 14 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511903.1 | 0 | 1 | 473 | 9 | 471 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 46 | 411 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 46 | 411 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 46 | 411 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 46 | 411 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 1e-17 | 27 | 385 | 144 | 533 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |