Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.007G209200.1 |
Family | GH28 |
Protein Properties | Length: 465 Molecular Weight: 50841.5 Isoelectric Point: 6.3684 |
Chromosome | Chromosome/Scaffold: 07 Start: 44783089 End: 44786988 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 418 | 0 |
ADKGGAELFVPAGRWLTGSFDLISHLTLWLDNDAVILGSTNSEDWPIVEPLPSYGRGRELPGGRHRSLIYGRNLTDVVITGNNGTIDGQGSIWWDKFRNK TLGYTRPHLVELMNSTGVLISNVTFLNSPFWTIHPVYCSHVTIQNVTVIAPHGSPNTDGINPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPST NINIRRLIGKTTSAGIAIGSEMSGGVSEVHAEDIYIFNSRSAVRIKTSPGRGGYVRNVYISNMVLANVDIAIRFTGLYGEHPDDNYDQEALPVIERITIK DVIGEKVKRAGLIQGIKGDNFVNICLSNITLHVTSKLPWNCSYV |
Full Sequence |
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Protein Sequence Length: 465 Download |
MKRLSTLQLV GVFLVLASFS CSPWTVWGSS YCNRINLKEV RPHSVSITEF GAVGDGITLN 60 TKAFQNAIFY LNSFADKGGA ELFVPAGRWL TGSFDLISHL TLWLDNDAVI LGSTNSEDWP 120 IVEPLPSYGR GRELPGGRHR SLIYGRNLTD VVITGNNGTI DGQGSIWWDK FRNKTLGYTR 180 PHLVELMNST GVLISNVTFL NSPFWTIHPV YCSHVTIQNV TVIAPHGSPN TDGINPDSSD 240 NVCIEDCYIS TGDDLISIKS GWDGYGISFG RPSTNINIRR LIGKTTSAGI AIGSEMSGGV 300 SEVHAEDIYI FNSRSAVRIK TSPGRGGYVR NVYISNMVLA NVDIAIRFTG LYGEHPDDNY 360 DQEALPVIER ITIKDVIGEK VKRAGLIQGI KGDNFVNICL SNITLHVTSK LPWNCSYVKG 420 YSDLVSPEAC EPLNERISPE HCSDCCYVPN HLTSLGNQNS GAWV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-23 | 42 | 378 | 345 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 9.0e-24 | 14 | 342 | 346 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-29 | 43 | 386 | 356 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 9.0e-32 | 143 | 346 | 209 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-65 | 45 | 342 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU18828.1 | 0 | 19 | 461 | 17 | 459 | unknown [Glycine max] |
EMBL | CBI37055.1 | 0 | 19 | 464 | 17 | 463 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 19 | 464 | 68 | 514 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 19 | 449 | 17 | 446 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 19 | 464 | 27 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.4013e-45 | 33 | 406 | 16 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.4013e-45 | 33 | 406 | 16 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.4013e-45 | 33 | 406 | 16 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.4013e-45 | 33 | 406 | 16 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-20 | 89 | 418 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |