| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.007G211400.1 |
| Family | GH28 |
| Protein Properties | Length: 475 Molecular Weight: 51467.9 Isoelectric Point: 6.379 |
| Chromosome | Chromosome/Scaffold: 07 Start: 44977220 End: 44979547 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 103 | 430 | 0 |
| TACQSESAVKVILVPHGLSFIIQSTIFTGPCKGGLVLKVDGTLMPPDGPDSWPKNNSRRQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPHGTT SPGPCDSPVALRFFMSSNLTVQGLKIKNSPQFHFRFDGCESVHVESIYITSPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGAGCHDVDIKNITCG PGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSGVTFTNIHMESVRNPIIIDQFYCLSKDCSNKTSAVFVSNISYTNIKGTYDI RHPPMHFACSDSVPCTNLTLSDIELLPS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 475 Download |
| MRPSHILSLA LSLYFLTLFL PTQARYHFHK NKHSHYHNAP EISPSPSPLP GPSSAPDEAP 60 SPSPTVDENY HNTSNNLFDI RAFGAIGDGV TDDTESFKMA WDTACQSESA VKVILVPHGL 120 SFIIQSTIFT GPCKGGLVLK VDGTLMPPDG PDSWPKNNSR RQWLVFYRIN GMSLEGSGLI 180 DGRGEKWWDL PCKPHKGPHG TTSPGPCDSP VALRFFMSSN LTVQGLKIKN SPQFHFRFDG 240 CESVHVESIY ITSPALSPNT DGIHIENTND VKIYNSVISN GDDCVSIGAG CHDVDIKNIT 300 CGPGHGISIG SLGNHNSRAC VSNITVRDSV IKVSDNGVRI KTWQGGSGSV SGVTFTNIHM 360 ESVRNPIIID QFYCLSKDCS NKTSAVFVSN ISYTNIKGTY DIRHPPMHFA CSDSVPCTNL 420 TLSDIELLPS EGDIVHDPYC WSAYGISQTL TIPPVSCLLE GLPQSISGND IDHC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 6.0e-79 | 74 | 433 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 1.0e-79 | 73 | 458 | 392 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-84 | 105 | 427 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-94 | 83 | 427 | 348 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-120 | 74 | 454 | 383 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37004.1 | 0 | 74 | 474 | 85 | 484 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002272733.1 | 0 | 74 | 474 | 66 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002276945.1 | 0 | 4 | 474 | 6 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002320271.1 | 0 | 74 | 474 | 39 | 438 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515219.1 | 0 | 67 | 474 | 131 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 4e-24 | 172 | 427 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-24 | 172 | 427 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-24 | 172 | 427 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-24 | 172 | 427 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 4e-24 | 172 | 427 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
