Basic Information | |
---|---|
Species | Phaseolus vulgaris |
Cazyme ID | Phvul.007G218300.1 |
Family | GH28 |
Protein Properties | Length: 415 Molecular Weight: 43845 Isoelectric Point: 7.1923 |
Chromosome | Chromosome/Scaffold: 07 Start: 45704481 End: 45706363 |
Description | polygalacturonase 4 |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 68 | 402 | 0 |
GAACKNSTTEAKVLIPEGTYRIAQTMFAGPCNSPKPITVEVIGTVVANTNPSQYVSPEWFTFQDIDGLVLTGTGVFDGQGAAMWPLNDCKKNKNNCAPLP ASLKFYKVNNSMVTGITSLNSMQFHFHIHGCSNVSLSHLNITAPENSPNTDGMHISSSDMIRVSSSVIGTGDDCISIGHSTTNLTIHDITCGPGHGISVG SLGKRPEEGSVNGVTVTNCTFVNTTNGARIKTWTGTVPMEIKNITYEGIIMKDVQNPVIIDQSYGSGLPGEPSTSVWKISDVHFRNIKGTTVSNIAVSLQ CSIRNPCQGVEVADVDLAYAGPLSTTFLSSCLNAK |
Full Sequence |
---|
Protein Sequence Length: 415 Download |
MATAKAIFFL GIALLSCSCI GASRALETRR SLLLPILNNG PQIFDVTKFG AVADGKTDNI 60 HAFRAAWGAA CKNSTTEAKV LIPEGTYRIA QTMFAGPCNS PKPITVEVIG TVVANTNPSQ 120 YVSPEWFTFQ DIDGLVLTGT GVFDGQGAAM WPLNDCKKNK NNCAPLPASL KFYKVNNSMV 180 TGITSLNSMQ FHFHIHGCSN VSLSHLNITA PENSPNTDGM HISSSDMIRV SSSVIGTGDD 240 CISIGHSTTN LTIHDITCGP GHGISVGSLG KRPEEGSVNG VTVTNCTFVN TTNGARIKTW 300 TGTVPMEIKN ITYEGIIMKD VQNPVIIDQS YGSGLPGEPS TSVWKISDVH FRNIKGTTVS 360 NIAVSLQCSI RNPCQGVEVA DVDLAYAGPL STTFLSSCLN AKAIFGGILN PPPC* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 4.0e-73 | 42 | 414 | 380 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 3.0e-73 | 43 | 414 | 378 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-74 | 41 | 411 | 376 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-79 | 74 | 402 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 6.0e-110 | 39 | 414 | 381 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 40 | 407 | 52 | 419 | hypothetical protein [Vitis vinifera] |
EMBL | CBI36886.1 | 0 | 4 | 414 | 9 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002268540.1 | 0 | 4 | 414 | 9 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 40 | 414 | 52 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301489.1 | 0 | 1 | 414 | 1 | 412 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 2e-18 | 142 | 360 | 80 | 307 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 3e-18 | 142 | 357 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-18 | 142 | 357 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-18 | 142 | 357 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-18 | 142 | 357 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |