Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.008G043600.1 |
Family | PL1 |
Protein Properties | Length: 445 Molecular Weight: 49184.3 Isoelectric Point: 8.4161 |
Chromosome | Chromosome/Scaffold: 08 Start: 3752195 End: 3754070 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 166 | 363 | 0 |
FARSMIIKLNYELLISSDKTIDGRGANVMIKDGSGLTMQFVNNVIIHGLRLQNIKSTPGGTIRDSWNHVGIRTKADGDAISIFGSSNIWIDHLSLSDCED GLVDIIQGSTGITISNCHMTKHNDVMLFGASDTFTGDKIMQVTVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSAPTILSQGNRFIAP |
Full Sequence |
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Protein Sequence Length: 445 Download |
MVGSSSKVSI IILVAFAITI PCLEGGIGEF DDFLKGQALE AHEIALESYV PDPVNMTDDL 60 NINVHGALTE VFKEESNHTR RELKQKYGGP CLALNPIDRC WRCKKGWAKN RFKLAHCAKG 120 FGRKATGGLE GKMYIVNDPS DDDPINPKPG TLRFGVLQKE PLWIIFARSM IIKLNYELLI 180 SSDKTIDGRG ANVMIKDGSG LTMQFVNNVI IHGLRLQNIK STPGGTIRDS WNHVGIRTKA 240 DGDAISIFGS SNIWIDHLSL SDCEDGLVDI IQGSTGITIS NCHMTKHNDV MLFGASDTFT 300 GDKIMQVTVA FNHFGQGLIQ RMPRCRWGFF HVLNNDYTHW LMYAIGGSSA PTILSQGNRF 360 IAPNNNAAKE VTHRDYAEPS VWEKWQWRSE NDVFMNGANF VQSGPPLGKL PFNKGFLMKP 420 RHGSQANRLT RFAGALNCKA NSPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 7.0e-15 | 26 | 83 | 58 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 3.0e-28 | 177 | 360 | 197 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-65 | 176 | 360 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-75 | 170 | 364 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAA86241.1 | 0 | 1 | 444 | 1 | 450 | pectate lyase homolog [Medicago sativa] |
GenBank | ACU23277.1 | 0 | 1 | 444 | 5 | 443 | unknown [Glycine max] |
EMBL | CAN79927.1 | 0 | 18 | 444 | 19 | 439 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 12 | 444 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 444 | 2 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 95 | 436 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 95 | 436 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-18 | 164 | 351 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 2e-16 | 173 | 364 | 71 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1jta_A | 3e-16 | 173 | 435 | 78 | 358 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |