Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.008G059700.1 |
Family | GH28 |
Protein Properties | Length: 487 Molecular Weight: 53291.7 Isoelectric Point: 6.5937 |
Chromosome | Chromosome/Scaffold: 08 Start: 5344007 End: 5347739 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 82 | 432 | 0 |
YASEGGSQLYVPAGKWLTGSFSLTSHFTLYLDKDAVLLASQDITEWPVLEPLPSYGRGRDAAAGRFASLIFGTNLTDVIVTGENGTIDGQGEFWWQQFHR KKLKYTRPYLIELMFSDNIQISNLTLLNSPSWNVHPVYSSNIIVQGITIFAPITSPNTDGINPDSCTNVRIEDCYIVSGDDCVAVKSGWDEYGIKFGWPT KHLVIRRLTCISPFSATIALGSEMSGGIQDVRAEDITAIQTESGVRIKTAAGRGGYVKDIYVKRMTLHTMKWAFKMTGDYNSHADSHYDPNALPEIKNIN YRDVVADNVTIAARFQGISNDPFTGICIANVTLRMAVKAKKQPWTCTDIEG |
Full Sequence |
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Protein Sequence Length: 487 Download |
MELLGKTHMR VIGTAFALLL VTLLNSERVE SRKAKVVTTS LEYNAINCRA HSASLTDFGG 60 VGDGKTSNTK AFQSAISQLS QYASEGGSQL YVPAGKWLTG SFSLTSHFTL YLDKDAVLLA 120 SQDITEWPVL EPLPSYGRGR DAAAGRFASL IFGTNLTDVI VTGENGTIDG QGEFWWQQFH 180 RKKLKYTRPY LIELMFSDNI QISNLTLLNS PSWNVHPVYS SNIIVQGITI FAPITSPNTD 240 GINPDSCTNV RIEDCYIVSG DDCVAVKSGW DEYGIKFGWP TKHLVIRRLT CISPFSATIA 300 LGSEMSGGIQ DVRAEDITAI QTESGVRIKT AAGRGGYVKD IYVKRMTLHT MKWAFKMTGD 360 YNSHADSHYD PNALPEIKNI NYRDVVADNV TIAARFQGIS NDPFTGICIA NVTLRMAVKA 420 KKQPWTCTDI EGVTSGVNPP PCGLLPDQGP EKITACDFPA DSLPIDMLEL KKCTTSMTYV 480 ADKFLF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-23 | 58 | 435 | 398 | + polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-26 | 32 | 439 | 428 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-31 | 52 | 442 | 406 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-31 | 151 | 442 | 300 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 8.0e-58 | 53 | 348 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 28 | 479 | 39 | 489 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
GenBank | AAP33475.1 | 0 | 40 | 474 | 35 | 469 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | XP_002277736.1 | 0 | 28 | 479 | 27 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 30 | 480 | 21 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511903.1 | 0 | 1 | 480 | 1 | 472 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 51 | 417 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 51 | 417 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 51 | 417 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 51 | 417 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-18 | 69 | 388 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |