Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.008G143500.1 |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 42380.3 Isoelectric Point: 8.3347 |
Chromosome | Chromosome/Scaffold: 08 Start: 26110528 End: 26113052 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 384 | 0 |
ESACGNLSPATIYVPKGRYLLRNTNFRGPCKRKVTFLIDGTLVAPEDYTALGNSGFWILFNHVENLVVSGGKLDGKGAAFWNCRRSGKSCPAGARSMTFN WVNNLVVSGITSVNSQVSHLVINTCKNVVVKNVRLIAPEQSPNTDGIHVERSTGVTITGSTLQTGDDCISIGDATYNLFISNIKCGPGHGVSIGSLGQKV DEKGVENVTLTNAIFSGSDNGVRIKTWARPSNGFVRNVLFQNIVMDKVENPIIIDQNYCPNNQGCPSQTSGIKISEITYLNINGSSATPEAVTFDCSPSN PCRGIKFQDINLTYKNIAATSSCKNIEGT |
Full Sequence |
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Protein Sequence Length: 396 Download |
MICVVETKFL VISCILCSVL LGFSNAVVTS RYNVVKFGAK ADGKTDSTEP FMKAWESACG 60 NLSPATIYVP KGRYLLRNTN FRGPCKRKVT FLIDGTLVAP EDYTALGNSG FWILFNHVEN 120 LVVSGGKLDG KGAAFWNCRR SGKSCPAGAR SMTFNWVNNL VVSGITSVNS QVSHLVINTC 180 KNVVVKNVRL IAPEQSPNTD GIHVERSTGV TITGSTLQTG DDCISIGDAT YNLFISNIKC 240 GPGHGVSIGS LGQKVDEKGV ENVTLTNAIF SGSDNGVRIK TWARPSNGFV RNVLFQNIVM 300 DKVENPIIID QNYCPNNQGC PSQTSGIKIS EITYLNINGS SATPEAVTFD CSPSNPCRGI 360 KFQDINLTYK NIAATSSCKN IEGTSSGTLV PESCI* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 4.0e-93 | 30 | 392 | 370 | + polygalacturonase ADPG |
pfam00295 | Glyco_hydro_28 | 4.0e-94 | 59 | 381 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02793 | PLN02793 | 5.0e-100 | 34 | 394 | 369 | + Probable polygalacturonase |
PLN02188 | PLN02188 | 3.0e-110 | 9 | 394 | 398 | + polygalacturonase/glycoside hydrolase family protein |
PLN02155 | PLN02155 | 6.0e-162 | 11 | 395 | 388 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 10 | 395 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 10 | 395 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 10 | 395 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 5 | 395 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 20 | 395 | 16 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 7e-21 | 124 | 381 | 80 | 333 | A Chain A, Crystal Structure Of The Lysosomal 66.3 Kda Protein From Mouse Solved By S-Sad |
PDB | 1ib4_A | 7e-21 | 124 | 381 | 80 | 333 | A Chain A, Crystal Structure Of The Lysosomal 66.3 Kda Protein From Mouse Solved By S-Sad |
PDB | 1ia5_A | 7e-21 | 124 | 381 | 80 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 4e-20 | 123 | 368 | 75 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-20 | 123 | 368 | 75 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |