Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.008G183500.1 |
Family | PL4 |
Protein Properties | Length: 648 Molecular Weight: 73524.9 Isoelectric Point: 4.6729 |
Chromosome | Chromosome/Scaffold: 08 Start: 48449160 End: 48458576 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 3 | 621 | 0 |
SPAAVKLYMEDDQVVMDNGIVQVYLSNPGGFVTRIQYNGIDNLLETRNKSGDRGYWDVVWSVAGSTGTTGTFQRIVGESFRVIMENEEEVEISFTSKWEP SLEGERAPLNIDKRYVMLCNSSGFYSYTIFEHLQEWPAFNIPQIRTVYKLSKDKFHYMVASDNRQRFMPLPDDRLPGRGEVLVPPEAVLLVNPLEPEFKG EVDDKYQYSSENKDLNVHGWISSESQTDPFIGFWVIIPSNEFRSGGPLKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLE GDDPLLLWEDAKYKTNAEVQSWPYDFPASEDFQKSSQRGSVCGTLLVKDRFLSDEKIIAEGAYIGLAPPGETGSWQRECKGYQFWSKANEKGYFSINNVR SGDYNLYAWVPGFIGDYWSNVLLTITPGCKIEVGEVIYEAPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLFLHHLDKYRQYGLWERYAELYPTQDLI YTVGVSDYTKDWFFAQVTRKKEDGSYQGTTWQIKFNLDDTEASKIYKLRLALASANVSELQVRVNDPKQDPPLLTTGVFGKDFAIARHGIHGLYWLFNID VPGFLLEKGVNTVFLTQTV |
Full Sequence |
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Protein Sequence Length: 648 Download |
MASPAAVKLY MEDDQVVMDN GIVQVYLSNP GGFVTRIQYN GIDNLLETRN KSGDRGYWDV 60 VWSVAGSTGT TGTFQRIVGE SFRVIMENEE EVEISFTSKW EPSLEGERAP LNIDKRYVML 120 CNSSGFYSYT IFEHLQEWPA FNIPQIRTVY KLSKDKFHYM VASDNRQRFM PLPDDRLPGR 180 GEVLVPPEAV LLVNPLEPEF KGEVDDKYQY SSENKDLNVH GWISSESQTD PFIGFWVIIP 240 SNEFRSGGPL KQNLTSHVGP ISLAMFLSAH YAGEDIVLKL QPNEPWKKVF GPTFVYLNTL 300 LEGDDPLLLW EDAKYKTNAE VQSWPYDFPA SEDFQKSSQR GSVCGTLLVK DRFLSDEKII 360 AEGAYIGLAP PGETGSWQRE CKGYQFWSKA NEKGYFSINN VRSGDYNLYA WVPGFIGDYW 420 SNVLLTITPG CKIEVGEVIY EAPRDGPTLW EIGIPDRSAA EFYVPDPNPN YINKLFLHHL 480 DKYRQYGLWE RYAELYPTQD LIYTVGVSDY TKDWFFAQVT RKKEDGSYQG TTWQIKFNLD 540 DTEASKIYKL RLALASANVS ELQVRVNDPK QDPPLLTTGV FGKDFAIARH GIHGLYWLFN 600 IDVPGFLLEK GVNTVFLTQT VATGPLATFQ GIMYDYIRLE GPNPSSP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 5.0e-29 | 339 | 436 | 98 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-49 | 450 | 640 | 193 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-67 | 15 | 306 | 295 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 8.0e-81 | 3 | 204 | 202 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 3 | 642 | 2 | 644 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 18 | 641 | 1 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301114.1 | 0 | 1 | 644 | 1 | 633 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 6 | 647 | 5 | 638 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 645 | 1 | 637 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY293973 | 354 | 3 | 353 | 0 |
FY792769 | 268 | 341 | 608 | 0 |
DY922281 | 281 | 276 | 555 | 0 |
EL409069 | 281 | 355 | 634 | 0 |
DT552229 | 297 | 18 | 313 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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