Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.008G199400.1 |
Family | GH28 |
Protein Properties | Length: 443 Molecular Weight: 48034.4 Isoelectric Point: 6.6598 |
Chromosome | Chromosome/Scaffold: 08 Start: 50847303 End: 50852021 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 416 | 0 |
GTLLYVPPGVYLTEPFNLTSHMTLFLAAGAVIMATQDSSNWPLIAPLPSYGRGRELPGGRYMSFMHGDGVQDVVITGENGTIDGQGDAWWNKWRQGSLQF TRPNLVEFVNSRDIIISNVVFKNSPFWNIHPVYSSNVVVRFVTILAPRDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGLPSSNITI RRVSGSSPFAGIAIGSETSGGVENVLAEHINLYKMGIGIHIKTNSGRGGFIKNITVSHVYMEDARKGIRISGDVGDHPDDKFDPNALPIVKGVTMKNVWG VKVLQAGLIQGVKNSPFSDICLYDINLGGVTGPRTPPWKCSDVS |
Full Sequence |
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Protein Sequence Length: 443 Download |
MRLRCFTLLC LCCCWFVSGE AETVSCSNIV PLGFRTQNIS ITEFGGVGDG RTLNTRAFRE 60 AIYRVQHLPR VGGTLLYVPP GVYLTEPFNL TSHMTLFLAA GAVIMATQDS SNWPLIAPLP 120 SYGRGRELPG GRYMSFMHGD GVQDVVITGE NGTIDGQGDA WWNKWRQGSL QFTRPNLVEF 180 VNSRDIIISN VVFKNSPFWN IHPVYSSNVV VRFVTILAPR DSPNTDGIDP DSSSNVCIED 240 SYISTGDDLV AVKSGWDEYG IAYGLPSSNI TIRRVSGSSP FAGIAIGSET SGGVENVLAE 300 HINLYKMGIG IHIKTNSGRG GFIKNITVSH VYMEDARKGI RISGDVGDHP DDKFDPNALP 360 IVKGVTMKNV WGVKVLQAGL IQGVKNSPFS DICLYDINLG GVTGPRTPPW KCSDVSGFAH 420 QVSPWPCSEL SSNHQGSCAN YS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 8.0e-23 | 16 | 427 | 430 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 9.0e-27 | 39 | 433 | 406 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-28 | 39 | 401 | 381 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 8.0e-35 | 136 | 415 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 7.0e-54 | 40 | 365 | 358 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 1 | 432 | 4 | 433 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 5 | 441 | 11 | 446 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 4 | 432 | 3 | 433 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 32 | 441 | 1 | 411 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 5 | 441 | 12 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5.60519e-45 | 37 | 401 | 26 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5.60519e-45 | 37 | 401 | 26 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5.60519e-45 | 37 | 401 | 26 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5.60519e-45 | 37 | 401 | 26 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 8e-17 | 82 | 342 | 51 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |