y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.008G208100.1 |
Family | CE16 |
Protein Properties | Length: 908 Molecular Weight: 100354 Isoelectric Point: 6.9463 |
Chromosome | Chromosome/Scaffold: 08 Start: 51940521 End: 51945370 |
Description | F-box protein 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE16 | 648 | 883 | 2.9e-21 |
QATIMNQGSNSHQSLNQQLRQVSETMQLLQLQLTEDTAFQFTKSSIFFLSFGKEDYIELFLHNSSSTNQTLQRGAQHFATILVNQMANAARYLYNANARK ITCLGILPLGCTPRMAWELNSTSSAGDYNANGCVEHVNDMIFEYNRLLDEQIDKLNTEFPDAQMVFCDVYNGMMEIINEPRLYGFEDVKSACCGLGLNGA MIGCISMDMACDQASTHVWWDLFNPTQAVNKILADA |
Full Sequence |
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Protein Sequence Length: 908 Download |
MAFECLNRTG VSQNLAEFVA NPDIDTVEPN QLSSKSFTEG VATKNLFPDS RPGKSVKLKG 60 ASKISSKKGI KAPGSGLNQS SIPGDVVLNC GLSITDLPSA LISEILSCLD PKDLGIVSCV 120 STIFQRVASE HHAWKHFYCQ WWGLPTASLA VDDDKSWKEI FVEREFRSKT FMGRYSMEVL 180 YGHTEGVKTV FLLASAKLIF TSGYDSVVRM WDMENGLSIA SSRPLGCTIR AVAADRKLLV 240 AGGTDGFILC WRAVEGLPHL FELRASQNHQ NTEVRLWGHE GPITSLALDL TRIYSGSWDT 300 TVRVWDRDSM KCTAVLRHSD WVWALVPHDT SVASTSGSDV YIWDTSSGAL MTIVSNAHVG 360 NTYALARSHT GDFLFTGGEN GAIHMYEIVN DGYECEAWHV CTWVPHSAAV YSLAFEFPWL 420 VSASSDGKLA LIDVRKLLKS SKRALGKRVS KPPQRMLHGF KSNLFSVDIG ADRIVCGGEE 480 GVIRIWNFTE ALEIERRARK LRGIRLENRM RRRKLQTELS NDQCSVAAKK NSVTCIWPNK 540 RGMSGKLKAY IVHGQHTEKP IAPPNEKNDS HVSALYVLGD SSVDCGNNTL FYPLLHARLS 600 LYPCNGSDAT LLPQLLAEKI GLTSIRPFYG QNGSLEEVLG GLNFGSTQAT IMNQGSNSHQ 660 SLNQQLRQVS ETMQLLQLQL TEDTAFQFTK SSIFFLSFGK EDYIELFLHN SSSTNQTLQR 720 GAQHFATILV NQMANAARYL YNANARKITC LGILPLGCTP RMAWELNSTS SAGDYNANGC 780 VEHVNDMIFE YNRLLDEQID KLNTEFPDAQ MVFCDVYNGM MEIINEPRLY GFEDVKSACC 840 GLGLNGAMIG CISMDMACDQ ASTHVWWDLF NPTQAVNKIL ADAAWSGQPI ADLCRPISIH 900 QLASMKV* 960 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00200 | WD40 | 0.002 | 399 | 503 | 109 | + WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment. | ||
cd00200 | WD40 | 1.0e-14 | 177 | 306 | 134 | + WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment. | ||
cd00200 | WD40 | 3.0e-20 | 278 | 490 | 223 | + WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment. | ||
cd00200 | WD40 | 2.0e-35 | 179 | 487 | 321 | + WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment. | ||
cd01837 | SGNH_plant_lipase_like | 2.0e-63 | 574 | 887 | 328 | + SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. |
Gene Ontology | |
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GO Term | Description |
GO:0005515 | protein binding |
GO:0006629 | lipid metabolic process |
GO:0016788 | hydrolase activity, acting on ester bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_568408.1 | 0 | 67 | 549 | 46 | 539 | FBX2 (F-BOX PROTEIN 2) [Arabidopsis thaliana] |
RefSeq | XP_002269919.1 | 0 | 32 | 549 | 61 | 592 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312850.1 | 0 | 1 | 549 | 1 | 543 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002448549.1 | 0 | 90 | 549 | 78 | 564 | hypothetical protein SORBIDRAFT_06g028850 [Sorghum bicolor] |
RefSeq | XP_002521630.1 | 0 | 1 | 549 | 1 | 541 | F-box and wd40 domain protein, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3emh_A | 0.00000002 | 165 | 426 | 7 | 264 | B Chain B, Structural Basis Of Wdr5-Mll Interaction |
PDB | 3n0d_A | 0.00000006 | 165 | 426 | 10 | 261 | A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) |
PDB | 3n0d_A | 0.008 | 171 | 388 | 56 | 269 | A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO781966 | 371 | 1 | 371 | 0 |
CF210354 | 299 | 142 | 440 | 0 |
GT047469 | 339 | 117 | 448 | 0 |
EV275018 | 228 | 261 | 478 | 0 |
HO809122 | 214 | 351 | 549 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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