Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.008G286900.1 |
Family | GH28 |
Protein Properties | Length: 384 Molecular Weight: 41577.6 Isoelectric Point: 8.775 |
Chromosome | Chromosome/Scaffold: 08 Start: 59154574 End: 59156379 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 41 | 373 | 0 |
KEACASTSASKILISSGEYKMNAVNVKGPCKASVEIQVDGTIQAPADPYALKDAYEWIKIEYVDSFTLSGKGTFDGKGAIAWKHNNCRTHQNCKRNSMNF GFNFLNNSIVRGVTSKDSKNFHVNVLGCNNFTFDNFHISAPETSINTDGIHIGRSTNVKVLNSNIATGDDCVSLGDGSREVIIKNVKCGPGHGISVGSLG KYAGEEPVENLLVKNCTMTGTDNGVRIKTWPNTAVVTTVTNMHFEDFTMVNVLHPVIIDQEYCPWNQCSKENPSKIKISKVTFKNIKGTSRSKEGVTLIC SRSVPCEGVELSEVSLTYNGAPIVAKCVNVKPK |
Full Sequence |
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Protein Sequence Length: 384 Download |
MVANVLFLLL TISCTAQSTV IDIKKFGRNK DITQAFTKAW KEACASTSAS KILISSGEYK 60 MNAVNVKGPC KASVEIQVDG TIQAPADPYA LKDAYEWIKI EYVDSFTLSG KGTFDGKGAI 120 AWKHNNCRTH QNCKRNSMNF GFNFLNNSIV RGVTSKDSKN FHVNVLGCNN FTFDNFHISA 180 PETSINTDGI HIGRSTNVKV LNSNIATGDD CVSLGDGSRE VIIKNVKCGP GHGISVGSLG 240 KYAGEEPVEN LLVKNCTMTG TDNGVRIKTW PNTAVVTTVT NMHFEDFTMV NVLHPVIIDQ 300 EYCPWNQCSK ENPSKIKISK VTFKNIKGTS RSKEGVTLIC SRSVPCEGVE LSEVSLTYNG 360 APIVAKCVNV KPKITGKAPK CSA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-71 | 19 | 382 | 373 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-75 | 31 | 360 | 342 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 3.0e-88 | 5 | 376 | 383 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-110 | 44 | 371 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-121 | 16 | 376 | 367 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO62938.1 | 0 | 5 | 383 | 9 | 393 | polygalactorunase PG11 precursor [Medicago sativa] |
EMBL | CAA72003.1 | 0 | 5 | 382 | 11 | 390 | polygalacturonase [Medicago sativa] |
EMBL | CAF07050.1 | 0 | 16 | 332 | 20 | 340 | polygalacturonase precursor [Medicago truncatula] |
Swiss-Prot | Q40312 | 0 | 5 | 383 | 9 | 393 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002329175.1 | 0 | 1 | 376 | 10 | 386 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-18 | 110 | 371 | 115 | 375 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.000000000000009 | 140 | 370 | 107 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.000000000000009 | 140 | 370 | 107 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.000000000000009 | 140 | 370 | 107 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.0000000000001 | 141 | 378 | 115 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |