Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.009G125800.1 |
Family | PL1 |
Protein Properties | Length: 440 Molecular Weight: 48233.9 Isoelectric Point: 7.794 |
Chromosome | Chromosome/Scaffold: 09 Start: 18605290 End: 18606609 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 160 | 359 | 0 |
ITFARSMIITLQQELLISSDKTIDGRGANVQIRDGAGLTMQFVNNVIIHGIRVKNIVSKEGGMIRDSYNHVGLRTRSDGDAISVFGASNIWIDHVSLSNS DDGLIDVIQGSTAITISNCHMTRHNDVMLFGATDTYSGDKIMQITVAFNHFGQGLIQRMPRCRMGFFHVLNNDYTHWMMYAIGGSAAPTILSQGNRFIAP |
Full Sequence |
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Protein Sequence Length: 440 Download |
MAGSASKVVF SLLVTLAITI PCLEAGIAEF DDFLKAQSEK AHKIALESYV PTPEFVASEL 60 NYHVHLSMLN STRRGLKAGN NDAGAPCDSS NPIDNCWRCN KDWANDRYRL AKCGKGFGRR 120 AVGGLGGPIY VVTDNSDEDM VNPKEGTLRY GVTQKGPLWI TFARSMIITL QQELLISSDK 180 TIDGRGANVQ IRDGAGLTMQ FVNNVIIHGI RVKNIVSKEG GMIRDSYNHV GLRTRSDGDA 240 ISVFGASNIW IDHVSLSNSD DGLIDVIQGS TAITISNCHM TRHNDVMLFG ATDTYSGDKI 300 MQITVAFNHF GQGLIQRMPR CRMGFFHVLN NDYTHWMMYA IGGSAAPTIL SQGNRFIAPN 360 NDAAKEITHR VDAEPEVWKN WQWQSDMDLL MNGATFNTSG SPITTQYKKG LLMKPRDGTH 420 VSRLTRHAGA LNCFVGLPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 7.0e-14 | 26 | 76 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 3.0e-26 | 173 | 356 | 197 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 9.0e-64 | 171 | 356 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-75 | 166 | 360 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAA86241.1 | 0 | 1 | 439 | 1 | 450 | pectate lyase homolog [Medicago sativa] |
GenBank | ACU23277.1 | 0 | 1 | 439 | 5 | 443 | unknown [Glycine max] |
RefSeq | XP_002311599.1 | 0 | 12 | 439 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 3 | 439 | 2 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 6 | 439 | 7 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 91 | 431 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 91 | 431 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-20 | 122 | 347 | 22 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000001 | 174 | 356 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000003 | 171 | 424 | 73 | 342 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |