Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.009G144800.1 |
Family | PL4 |
Protein Properties | Length: 644 Molecular Weight: 73381.7 Isoelectric Point: 4.8081 |
Chromosome | Chromosome/Scaffold: 09 Start: 21229191 End: 21233782 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 6 | 623 | 0 |
VQLTIQDNHVVMENGILKVTLSNPGGIVTGIQYNNIDNLLEVLNDESNRGYWDLVWSSPTSTSTSGTFDVIKGTKFQVMVENEDQVELSFTRTWDISLEG KLVPLNIDKRFIMLRGCSGFYSYAIYEHLEEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLLNPIQPELKGEVDD KYQYSCDNKDNKVHGWICMDPAVGFWLITPTDEFRSGGPVKQNLTSHVGPTTLAMFLSAHYAGEDLVPKFNAGEAWKKVFGPVFIYLNSSYDGGDPLKLW DDAKQQMLVEVQSWPYSFPESEDFAKWDERGNVSGRLLVRERFINDDYISAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFTITNVCAGDYNVYA WVPGFIGDYKYDVVMNITKGCDIDLGELVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDY TKDWFFAQVTRKKDDNTFQGTTWQIKFELDKVNKSSSYKLRVALASATLSEFQVRVNNPKGPRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIPGTQFVE GDNTIFLTQTRGNSPFQA |
Full Sequence |
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Protein Sequence Length: 644 Download |
MPLLGVQLTI QDNHVVMENG ILKVTLSNPG GIVTGIQYNN IDNLLEVLND ESNRGYWDLV 60 WSSPTSTSTS GTFDVIKGTK FQVMVENEDQ VELSFTRTWD ISLEGKLVPL NIDKRFIMLR 120 GCSGFYSYAI YEHLEEWPAF NLDETRIAFK LRKDKFHYMA MADNRQRNMP LPDDRLPPKG 180 KALAYPEAVL LLNPIQPELK GEVDDKYQYS CDNKDNKVHG WICMDPAVGF WLITPTDEFR 240 SGGPVKQNLT SHVGPTTLAM FLSAHYAGED LVPKFNAGEA WKKVFGPVFI YLNSSYDGGD 300 PLKLWDDAKQ QMLVEVQSWP YSFPESEDFA KWDERGNVSG RLLVRERFIN DDYISAKGAY 360 VGLAPPGDVG SWQRECKNYQ FWAKADDDGY FTITNVCAGD YNVYAWVPGF IGDYKYDVVM 420 NITKGCDIDL GELVYEPPRD GPTLWEIGIP DRTAAEFYVP DPNPKYINKL YVNHPDKFRQ 480 YGLWERYAEL YPDKDLIYTI GVSDYTKDWF FAQVTRKKDD NTFQGTTWQI KFELDKVNKS 540 SSYKLRVALA SATLSEFQVR VNNPKGPRPL FSSGLIGRDN SIARHGIHGL YWLYNVDIPG 600 TQFVEGDNTI FLTQTRGNSP FQAIMYDYIR LEAPPSTFNN TNS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 6.0e-31 | 334 | 433 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-54 | 445 | 632 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-73 | 8 | 304 | 300 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-97 | 7 | 203 | 197 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 642 | 1 | 652 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 642 | 1 | 623 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 17 | 633 | 1 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 640 | 1 | 639 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 637 | 1 | 637 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479600 | 299 | 1 | 299 | 0 |
DW479599 | 294 | 1 | 294 | 0 |
GR828586 | 235 | 167 | 401 | 0 |
DY293973 | 346 | 6 | 348 | 0 |
DT552229 | 293 | 17 | 308 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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