Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.009G144900.1 |
Family | PL4 |
Protein Properties | Length: 637 Molecular Weight: 72479 Isoelectric Point: 5.558 |
Chromosome | Chromosome/Scaffold: 09 Start: 21236695 End: 21243704 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 7 | 617 | 0 |
RLHIQDHHVVMDNGIVQVTLSNPGGIVTGIRYNGVDNLLEVLNKESNRGYWDLVWSAPGTKGIFDVIQGTCFKVIVQNEEQVELSFTRMWDPSLEGKFVP LNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDLSETRITFKLRKDKFQYMAMADNRRRILPYPEDRLPGRCQTLGYAEAVLLTNPKDPQLQGEVDDKYQY SCANMDNRVHGWISFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLVPKIRGGESWKKVFGPVYIYLNSAAVSDDPLWLWEDAK IQMMNEVQSWPYYFPASEDFLKSDQRGNISGRLLVLDKYICTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIRNVRPGDYNLFAWVPG FVGDYKFVDFMKITPGSYTELGELVYEPPRDGPTLWEIGIPDRSAAEFYAPDPNPQYMNRLFINHPDRFRQYGLWDRYTELYPATDLVYTVGVNDYRKDW FYAQAPRKKEDNTLQGTTWQIKFELSGVVRGSTYKLRVAIASATLAELQVRVNDPNAGRPLFTSGLIGRDNSIARLGIHGIYWLYNVSIPGSLLIDGTNT IYFTQPRCTSP |
Full Sequence |
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Protein Sequence Length: 637 Download |
MSGPGVRLHI QDHHVVMDNG IVQVTLSNPG GIVTGIRYNG VDNLLEVLNK ESNRGYWDLV 60 WSAPGTKGIF DVIQGTCFKV IVQNEEQVEL SFTRMWDPSL EGKFVPLNID KRFIMLRGSS 120 GFYSYGIYEH LNGWPDFDLS ETRITFKLRK DKFQYMAMAD NRRRILPYPE DRLPGRCQTL 180 GYAEAVLLTN PKDPQLQGEV DDKYQYSCAN MDNRVHGWIS FNPPVGFWQI TPSDEFRSGG 240 PLKQNLTSHV GPTTLAMFLS SHYAGQDLVP KIRGGESWKK VFGPVYIYLN SAAVSDDPLW 300 LWEDAKIQMM NEVQSWPYYF PASEDFLKSD QRGNISGRLL VLDKYICTDL ISANGAYVGL 360 APPGDAGSWQ RECKDYQFWT RADENGFFTI RNVRPGDYNL FAWVPGFVGD YKFVDFMKIT 420 PGSYTELGEL VYEPPRDGPT LWEIGIPDRS AAEFYAPDPN PQYMNRLFIN HPDRFRQYGL 480 WDRYTELYPA TDLVYTVGVN DYRKDWFYAQ APRKKEDNTL QGTTWQIKFE LSGVVRGSTY 540 KLRVAIASAT LAELQVRVND PNAGRPLFTS GLIGRDNSIA RLGIHGIYWL YNVSIPGSLL 600 IDGTNTIYFT QPRCTSPFQG IMYDYIRLEG PPCEGI* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam13620 | CarboxypepD_reg | 0.003 | 380 | 407 | 28 | + Carboxypeptidase regulatory-like domain. |
cd10316 | RGL4_M | 9.0e-31 | 331 | 430 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10317 | RGL4_C | 3.0e-53 | 442 | 629 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10320 | RGL4_N | 3.0e-77 | 6 | 292 | 293 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
pfam06045 | Rhamnogal_lyase | 4.0e-102 | 1 | 200 | 200 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 633 | 1 | 646 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 633 | 1 | 617 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002306520.1 | 0 | 17 | 632 | 1 | 616 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 1 | 631 | 1 | 631 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 5 | 635 | 5 | 637 | lyase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3njx_A | 0.009 | 282 | 607 | 199 | 481 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO266963 | 263 | 1 | 263 | 0 |
GW864372 | 311 | 144 | 454 | 0 |
DY293973 | 358 | 1 | 346 | 0 |
DW479599 | 294 | 1 | 291 | 0 |
DW479600 | 296 | 1 | 293 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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